Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 AL136363.2-201ENST00000604173 851 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 PRELID3BP2-201ENST00000605362 201 ntBASIC-1.08□□□□□ -2.58
VPS13AQ96RL7 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 RNU4-30P-201ENST00000410245 143 ntBASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 AL365434.2-201ENST00000607979 234 ntBASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 AC013476.2-201ENST00000614456 459 ntBASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 FAS-AS1.2-201ENST00000620386 170 ntBASIC-1.09□□□□□ -2.58
VPS13AQ96RL7 RNU6-127P-201ENST00000390897 107 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 RNA5SP100-201ENST00000410903 110 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 RNA5SP59-201ENST00000410922 110 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 5S_rRNA.3-201ENST00000517021 110 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 MIR4770-201ENST00000579149 58 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 5S_rRNA.19-201ENST00000612131 110 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 5S_rRNA.18-201ENST00000621941 110 ntBASIC-1.1□□□□□ -2.58
VPS13AQ96RL7 MIR561-201ENST00000385216 97 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 AL162395.1-201ENST00000457882 422 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 AC010424.1-201ENST00000506336 297 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 MTND1P15-201ENST00000579262 949 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 MTND5P30-201ENST00000452896 1731 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.423-201ENST00000384057 113 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 U6atac.2-201ENST00000408644 118 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 SNORA40.8-201ENST00000411034 126 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 MTND1P28-201ENST00000435623 950 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 RNU6-1092P-201ENST00000516955 87 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 RNU6-897P-201ENST00000517135 105 ntBASIC-1.1□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 RNA5SP482-201ENST00000391269 118 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 AC010627.1-201ENST00000503819 1294 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 TMF1P1-201ENST00000576058 373 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 MIR377-201ENST00000362145 69 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 RNU6-1218P-201ENST00000458990 108 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 RNU2-60P-201ENST00000517290 128 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 MTCO2P15-201ENST00000532655 656 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 DUXAP1-201ENST00000556632 463 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 AC245008.1-201ENST00000608123 476 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 AC009032.1-201ENST00000617574 431 ntBASIC-1.11□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 MTCO2P25-201ENST00000447065 681 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 MIR3609-201ENST00000582661 80 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 AC091057.3-201ENST00000602684 733 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 AL359314.1-201ENST00000616913 261 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 RNU6-1141P-201ENST00000364520 107 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 MIR92A2-201ENST00000385299 75 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 AC092170.1-201ENST00000440211 356 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 SNORA31.17-201ENST00000516953 127 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 ANKRD36BP2-206ENST00000575193 1245 ntBASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-1.12□□□□□ -2.59
VPS13AQ96RL7 MIR493-201ENST00000385254 89 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 RNU6-884P-201ENST00000363889 107 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 SNORD115-42-201ENST00000364273 82 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 MIR29C-201ENST00000385231 88 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 RNU11-3P-201ENST00000391111 133 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 MIR1283-2-201ENST00000408621 87 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 MTND4P15-201ENST00000437913 1033 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 RPS29P27-201ENST00000463711 170 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 RBBP4P6-201ENST00000508098 202 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 NACAP3-201ENST00000552100 481 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 AC023824.3-201ENST00000569003 562 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 BNIP3P39-201ENST00000601077 554 ntBASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-1.13□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 Y_RNA.363-201ENST00000365529 113 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 MT-TY-201ENST00000387409 66 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 RNA5SP240-201ENST00000365355 128 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 SNORA12-201ENST00000391162 147 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 RNU6-177P-201ENST00000411257 104 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 RPL32P14-201ENST00000463196 378 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 SNORA31.2-201ENST00000516019 134 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 ROCK1P1-201ENST00000573767 549 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 CASC19-280ENST00000642102 1351 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 RNU6-898P-201ENST00000365627 104 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 MTATP6P31-201ENST00000406985 692 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 NDUFS5P4-201ENST00000412983 318 ntBASIC-1.14□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms