Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC099522.1-202ENST00000514718 367 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 SCARNA3-201ENST00000517097 143 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 AL713866.2-201ENST00000603579 219 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 RPL17P51-201ENST00000605218 238 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 snoU18.1-201ENST00000629629 71 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNA5SP388-201ENST00000362584 119 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNU1-72P-201ENST00000362976 153 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 U3.8-201ENST00000363675 217 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNU6-923P-201ENST00000364753 107 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 SNORA51.4-201ENST00000364993 124 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 SNORD21-201ENST00000383953 95 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNU4-70P-201ENST00000384579 139 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AC025554.1-201ENST00000505641 188 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 SEM1P1-201ENST00000506694 209 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNY3P16-201ENST00000516338 101 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RNU6-965P-201ENST00000516721 96 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AC069240.1-201ENST00000548774 375 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 MIR3138-201ENST00000585238 82 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AL020997.2-201ENST00000602607 184 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 ARF4P1-201ENST00000605447 541 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 MIR7151-201ENST00000617477 60 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AL445567.2-201ENST00000618935 498 ntBASIC3.21□□□□□ -1.9
CCDC140Q96MF4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC140Q96MF4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.82-201ENST00000363000 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.92-201ENST00000363043 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.235-201ENST00000364412 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.306-201ENST00000365015 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.312-201ENST00000365089 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.322-201ENST00000365151 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AC017083.1-201ENST00000428093 483 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 TOMM22P2-201ENST00000430735 237 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 MTND2P29-201ENST00000438595 412 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AC006011.1-201ENST00000442758 349 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Z75741.1-201ENST00000446793 314 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.650-201ENST00000459002 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 RPL7P49-201ENST00000471402 708 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 CKS1BP2-201ENST00000497342 240 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.777-201ENST00000516982 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AP003730.1-201ENST00000524605 285 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AP002392.1-201ENST00000537692 208 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 MIR4282-201ENST00000583613 67 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.771-201ENST00000598668 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AL133393.1-201ENST00000603277 287 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 AL365434.2-201ENST00000607979 234 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 FTX_2.1-201ENST00000618816 94 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 MIR8059-201ENST00000620427 81 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.789-201ENST00000622480 102 ntBASIC3.2□□□□□ -1.9
CCDC140Q96MF4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CCDC140Q96MF4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.217-201ENST00000364214 105 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RNA5SP513-201ENST00000364648 118 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RNU6-47P-201ENST00000383866 107 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 MIR513A2-201ENST00000385249 127 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 SUMO1P3-201ENST00000439961 304 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.641-201ENST00000459414 105 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms