Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP001893.2-201ENST00000526949 202 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 AC103996.1-201ENST00000555468 102 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 AC022254.1-201ENST00000567857 235 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 MIR4648-201ENST00000580107 72 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 AL022345.1-201ENST00000607292 135 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 AC013412.1-201ENST00000610687 192 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 AL359880.1-201ENST00000621879 266 ntBASIC1.92□□□□□ -2.1
VPS39Q96JC1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS39Q96JC1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS39Q96JC1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS39Q96JC1 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU1-58P-201ENST00000362413 163 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-105P-201ENST00000363909 104 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-336P-201ENST00000364891 107 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 Y_RNA.399-201ENST00000383955 105 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-483P-201ENST00000384088 108 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 SNORA70B-201ENST00000384210 135 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 SNORD73A-201ENST00000386062 65 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 SNORD37.1-201ENST00000390968 65 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 BTF3L4P2-201ENST00000392798 346 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-1068P-201ENST00000410958 103 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-293P-201ENST00000411259 106 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AL030996.1-201ENST00000411430 235 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RPL31P63-201ENST00000422565 375 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AC243964.1-201ENST00000441814 261 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.91□□□□□ -2.1
VPS39Q96JC1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS39Q96JC1 MTCO2P7-201ENST00000446518 666 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AL031274.1-201ENST00000450334 232 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU7-167P-201ENST00000459160 62 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AC083798.1-201ENST00000472671 131 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS39Q96JC1 AC019235.1-201ENST00000503847 207 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RPL39P5-202ENST00000512505 151 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-965P-201ENST00000516721 96 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AP005660.1-201ENST00000522972 293 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.91□□□□□ -2.1
VPS39Q96JC1 AC090115.3-201ENST00000553218 849 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 CYP2C61P-201ENST00000604072 290 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 RNU6-85P-201ENST00000605989 107 ntBASIC1.91□□□□□ -2.1
VPS39Q96JC1 snoU2_19.1-201ENST00000362361 80 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RNU6-1085P-201ENST00000363576 107 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RNU4-66P-201ENST00000365199 138 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RNU6-827P-201ENST00000365553 106 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RNU2-20P-201ENST00000410425 191 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 RPL39P29-201ENST00000447779 157 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 TPTE2P5-203ENST00000458118 728 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 SNRPGP7-201ENST00000469016 106 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RPL30P1-201ENST00000488676 339 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RN7SL274P-201ENST00000492268 272 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 RNU6-377P-201ENST00000515965 102 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AP003034.1-201ENST00000534621 422 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL512360.1-201ENST00000555346 234 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 VN1R80P-201ENST00000597126 338 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AC107304.1-201ENST00000604229 296 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL159153.1-201ENST00000619688 317 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.9□□□□□ -2.11
VPS39Q96JC1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.9□□□□□ -2.11
VPS39Q96JC1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS39Q96JC1 RNU6-1090P-201ENST00000364065 94 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 RNU6-1164P-201ENST00000364428 107 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 Y_RNA.554-201ENST00000384672 102 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 MIR597-201ENST00000384968 97 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS39Q96JC1 AL591043.1-201ENST00000432461 424 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.89□□□□□ -2.11
VPS39Q96JC1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS39Q96JC1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS39Q96JC1 MTND3P16-201ENST00000452205 344 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS39Q96JC1 Y_RNA.693-201ENST00000516641 110 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 AL121757.2-201ENST00000611223 313 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 U2.17-201ENST00000611454 95 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.89□□□□□ -2.11
VPS39Q96JC1 AC063943.3-201ENST00000615562 356 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS39Q96JC1 AC241585.2-209ENST00000638217 143 ntBASIC1.89□□□□□ -2.11
VPS39Q96JC1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
VPS39Q96JC1 ZNF355P-201ENST00000427301 3216 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 Y_RNA.3-201ENST00000362331 103 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 Y_RNA.38-201ENST00000362617 102 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RNU6-743P-201ENST00000364151 106 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RNU6-1322P-201ENST00000364309 107 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 Y_RNA.480-201ENST00000384364 102 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC019129.1-201ENST00000403786 261 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RNU6-648P-201ENST00000410190 107 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RNA5SP501-201ENST00000410990 112 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 VN1R36P-201ENST00000414936 291 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 AL117339.3-201ENST00000418733 162 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 CBX3P6-201ENST00000430257 527 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms