Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC073614.1-201ENST00000438690 650 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC013470.1-201ENST00000453438 462 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC098862.1-201ENST00000504991 413 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 SNORD27.1-201ENST00000516319 72 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 Vault.3-201ENST00000516676 95 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 RNU6-965P-201ENST00000516721 96 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AP005660.1-201ENST00000522972 293 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AP002453.2-201ENST00000533503 320 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AL356057.1-201ENST00000533798 831 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 TRAV32-201ENST00000553993 340 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.09□□□□□ -2.23
LMX1AQ8TE12 MIR3169-201ENST00000578032 83 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 MIR4775-201ENST00000581168 75 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 MIR4422-201ENST00000581938 83 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC008752.3-201ENST00000588113 712 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC092354.1-201ENST00000606057 376 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 AC079248.2-201ENST00000623779 326 ntBASIC1.09□□□□□ -2.23
LMX1AQ8TE12 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.09□□□□□ -2.24
LMX1AQ8TE12 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.24
LMX1AQ8TE12 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
LMX1AQ8TE12 RNU4-15P-201ENST00000362613 141 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 Y_RNA.67-201ENST00000362870 100 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RNU6-105P-201ENST00000363909 104 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RNY1P12-201ENST00000364251 105 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RNU5E-7P-201ENST00000365290 117 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 Y_RNA.367-201ENST00000365544 101 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RNU6-1080P-201ENST00000383982 107 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RNU6-45P-201ENST00000384471 107 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 MIR520E-201ENST00000384867 87 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 MIR150-201ENST00000385048 84 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AL031577.2-201ENST00000404133 280 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC243964.1-201ENST00000441814 261 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 KATNBL1P3-201ENST00000443475 909 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AL035666.1-201ENST00000446195 348 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 MTND1P18-201ENST00000448191 573 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 RPS23P4-201ENST00000487908 423 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC022447.4-201ENST00000504053 364 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC074344.1-201ENST00000512823 224 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC106038.2-201ENST00000520706 568 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC115990.1-201ENST00000526957 301 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC087883.1-201ENST00000551882 391 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AC063943.3-201ENST00000615562 356 ntBASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
LMX1AQ8TE12 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 SNORD114-6-201ENST00000364393 72 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 Y_RNA.324-201ENST00000365165 102 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 Y_RNA.332-201ENST00000365271 113 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 RNU6-108P-201ENST00000365558 107 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 MIR544A-201ENST00000384855 91 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 RNU6-550P-201ENST00000391057 101 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 RNU1-78P-201ENST00000391248 165 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 BTF3L4P2-201ENST00000392798 346 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AL591043.1-201ENST00000432461 424 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 MTCO1P44-201ENST00000441935 243 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 GAPDHP17-201ENST00000449858 1001 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 RPS29P1-201ENST00000465274 159 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 MTND2P33-201ENST00000506452 1031 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 SUB1P4-201ENST00000566062 339 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 FAM106DP-201ENST00000586416 501 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 VN1R107P-201ENST00000601784 209 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AL133173.2-201ENST00000614270 90 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 MIR8074-201ENST00000615081 81 ntBASIC1.07□□□□□ -2.24
LMX1AQ8TE12 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
LMX1AQ8TE12 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
LMX1AQ8TE12 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.06□□□□□ -2.24
LMX1AQ8TE12 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.06□□□□□ -2.24
LMX1AQ8TE12 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
LMX1AQ8TE12 RNU6-1097P-201ENST00000363586 107 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 RNA5SP493-201ENST00000364115 91 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 SNORD26-201ENST00000384147 75 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 MIR222-201ENST00000384992 110 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 MIR454-201ENST00000390180 115 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 RPS29P13-201ENST00000402041 169 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 RPL30P13-201ENST00000418873 348 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 MTND5P25-201ENST00000430499 799 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 MTND1P30-201ENST00000441241 901 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 AL022238.1-201ENST00000442557 355 ntBASIC1.06□□□□□ -2.24
LMX1AQ8TE12 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.06□□□□□ -2.24
LMX1AQ8TE12 AC079781.2-201ENST00000446424 169 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 156.5 ms