Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC083798.1-201ENST00000472671 131 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-718P-201ENST00000516166 105 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-314P-201ENST00000516574 104 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 SCARNA16.3-201ENST00000516595 184 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 RN7SKP219-201ENST00000516825 296 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC115990.1-201ENST00000526957 301 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 MIR5583-1-201ENST00000580941 59 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC073534.2-201ENST00000620377 381 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 SEPT14P19-203ENST00000633205 211 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 MIR3688-2-201ENST00000636963 87 ntBASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.88□□□□□ -2.11
ZNF540Q8NDQ6 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 CBX3P1-201ENST00000325243 554 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.38-201ENST00000362617 102 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-451P-201ENST00000362921 107 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-179P-201ENST00000363350 107 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.576-201ENST00000384781 102 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 SNORD115-47-201ENST00000391226 86 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 EEF1A1P40-201ENST00000412883 573 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 EIF1P1-201ENST00000421436 341 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 PGBD4P6-201ENST00000421501 610 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 RPS15AP10-201ENST00000432472 382 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 RPS29P15-201ENST00000458329 171 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 snoU13.23-201ENST00000458863 104 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 AC069439.1-201ENST00000494739 167 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 MTCYBP40-201ENST00000509390 1135 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 ZNF519P2-201ENST00000557032 169 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 AC007014.2-201ENST00000615581 479 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 RMST_4.1-201ENST00000616886 107 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 MIR1321-201ENST00000637766 79 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 MTND5P6-201ENST00000422338 1798 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 MTND5P17-201ENST00000418405 1603 ntBASIC1.87□□□□□ -2.11
ZNF540Q8NDQ6 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 snoU2_19.1-201ENST00000362361 80 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNY4P14-201ENST00000363656 96 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1164P-201ENST00000364428 107 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.248-201ENST00000364501 109 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-534P-201ENST00000364877 106 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU4-12P-201ENST00000365233 139 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU5E-7P-201ENST00000365290 117 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU4-20P-201ENST00000365601 151 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1029P-201ENST00000384109 107 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL590002.1-201ENST00000406554 418 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 MTCYBP8-201ENST00000422855 651 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 TIMM9P3-201ENST00000428659 274 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 IFNA20P-201ENST00000436840 528 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RPL7P54-201ENST00000438336 674 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL360271.2-201ENST00000447710 161 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RPL39P29-201ENST00000447779 157 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL353752.1-201ENST00000454946 260 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 GMFBP1-201ENST00000467831 427 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RPL30P12-201ENST00000474666 353 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AC079382.1-201ENST00000493346 557 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL117351.2-201ENST00000513571 157 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-965P-201ENST00000516721 96 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 TRAV32-201ENST00000553993 340 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL157687.1-201ENST00000554853 619 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AL512360.1-201ENST00000555346 234 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 MIR4703-201ENST00000577728 79 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 MIR4424-201ENST00000585257 86 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 AP000654.2-201ENST00000605633 586 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RMST_3.1-201ENST00000611651 109 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 RMST_7.1-201ENST00000621935 268 ntBASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF540Q8NDQ6 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1085P-201ENST00000363576 107 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.167-201ENST00000363735 109 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 SNORA69-201ENST00000383895 132 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 MIR597-201ENST00000384968 97 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-550P-201ENST00000391057 101 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-903P-201ENST00000391270 109 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 Y_RNA.597-201ENST00000410463 100 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNA5SP501-201ENST00000410990 112 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RNU6-1245P-201ENST00000411130 106 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 RPL21P90-201ENST00000415692 466 ntBASIC1.85□□□□□ -2.11
ZNF540Q8NDQ6 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms