Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 VN1R36P-201ENST00000414936 291 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AL358934.1-201ENST00000432346 324 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 SNRPFP3-201ENST00000457792 225 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 RNU2-44P-201ENST00000516795 194 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC022880.1-201ENST00000534017 973 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 HSPE1P4-201ENST00000550617 308 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 MIR3683-201ENST00000580847 82 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AL359821.1-201ENST00000605519 182 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC063944.3-201ENST00000609969 533 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC109347.2-201ENST00000610220 349 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 AC084768.2-201ENST00000622736 221 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 CBX3P1-201ENST00000325243 554 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 RNU6-266P-201ENST00000364225 107 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 SNORD32B-201ENST00000364460 84 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 RNU6-26P-201ENST00000383985 107 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 RN7SKP142-201ENST00000411236 328 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 NDUFA5P4-201ENST00000436704 385 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 AL035666.1-201ENST00000446195 348 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 RNU6-333P-201ENST00000459117 107 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 SUB1P3-201ENST00000564581 315 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 AL391840.1-201ENST00000571144 367 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 VN1R107P-201ENST00000601784 209 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 DUXAP9-208ENST00000622815 614 ntBASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
HDDC3Q8N4P3 RNU6-234P-201ENST00000365229 104 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC013470.1-201ENST00000453438 462 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC005840.1-201ENST00000498412 377 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC005741.1-201ENST00000511094 432 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC103996.1-201ENST00000555468 102 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AC022254.1-201ENST00000567857 235 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 MIR3941-201ENST00000582572 103 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 AL590240.4-201ENST00000616908 390 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 uc_338.20-201ENST00000621563 178 ntBASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
HDDC3Q8N4P3 RNA5SP493-201ENST00000364115 91 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 RNU6-827P-201ENST00000365553 106 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 U8.10-201ENST00000384260 133 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 SNORA67.5-201ENST00000391036 107 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AL627390.1-201ENST00000396055 340 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AL049545.1-201ENST00000401856 572 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AC009310.1-201ENST00000414414 451 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AL117339.3-201ENST00000418733 162 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 HSPE1P21-201ENST00000438283 308 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 HMGN2P18-201ENST00000450680 270 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AC105417.1-201ENST00000514691 285 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 SNORA31.16-201ENST00000516773 139 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 RNU6-430P-201ENST00000517078 107 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 SNORA25.17-201ENST00000517184 124 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 MIR3935-201ENST00000583472 104 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AC025449.1-201ENST00000603896 529 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 AC073114.1-201ENST00000612027 490 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 MIR8070-201ENST00000616510 88 ntBASIC1.84□□□□□ -2.11
HDDC3Q8N4P3 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.12
HDDC3Q8N4P3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.84□□□□□ -2.12
HDDC3Q8N4P3 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 ZNF680P1-201ENST00000436625 1469 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC092268.1-201ENST00000342691 405 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.355-201ENST00000365462 98 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 MIR9-3-201ENST00000385084 90 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 SNORA48.1-201ENST00000390879 135 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 RN7SKP61-201ENST00000410642 295 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC078809.1-201ENST00000427601 140 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 Z82205.1-201ENST00000428456 297 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 MTCO2P11-201ENST00000431069 680 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC245517.4-201ENST00000448601 281 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC107393.1-201ENST00000512403 346 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 SNORA44.1-201ENST00000517031 108 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 COPS8P3-201ENST00000526024 482 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 ANP32BP3-201ENST00000559213 706 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AC109446.1-201ENST00000566172 220 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 MIR3923-201ENST00000579521 83 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 AL356157.2-201ENST00000605122 111 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 MIR502-201ENST00000606349 86 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 U2.17-201ENST00000611454 95 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 MIR8081-201ENST00000611533 95 ntBASIC1.83□□□□□ -2.12
HDDC3Q8N4P3 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms