Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005034.5-201ENST00000604219 466 ntBASIC1.71□□□□□ -2.14
MSH6P52701 RNU6-655P-201ENST00000362858 107 ntBASIC1.7□□□□□ -2.14
MSH6P52701 RNU6-1210P-201ENST00000363775 107 ntBASIC1.7□□□□□ -2.14
MSH6P52701 RNU6-997P-201ENST00000384725 107 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC007969.2-201ENST00000441891 191 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.7□□□□□ -2.14
MSH6P52701 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH6P52701 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH6P52701 AC107032.1-201ENST00000485945 480 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.7□□□□□ -2.14
MSH6P52701 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.7□□□□□ -2.14
MSH6P52701 MTCO3P28-201ENST00000513351 515 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH6P52701 AP002453.2-201ENST00000533503 320 ntBASIC1.7□□□□□ -2.14
MSH6P52701 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.7□□□□□ -2.14
MSH6P52701 MIR5000-201ENST00000577717 103 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AL360085.1-201ENST00000604713 532 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC006566.1-201ENST00000608943 513 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC007792.1-201ENST00000623023 402 ntBASIC1.7□□□□□ -2.14
MSH6P52701 AC120349.3-201ENST00000624377 529 ntBASIC1.7□□□□□ -2.14
MSH6P52701 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
MSH6P52701 RNU6-78P-201ENST00000362897 107 ntBASIC1.69□□□□□ -2.14
MSH6P52701 SNORD56.1-201ENST00000362913 68 ntBASIC1.69□□□□□ -2.14
MSH6P52701 RNU6-282P-201ENST00000365357 103 ntBASIC1.69□□□□□ -2.14
MSH6P52701 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
MSH6P52701 C1DP2-201ENST00000418167 426 ntBASIC1.69□□□□□ -2.14
MSH6P52701 SNRPEP10-201ENST00000420249 274 ntBASIC1.69□□□□□ -2.14
MSH6P52701 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
MSH6P52701 AL669831.1-202ENST00000428504 417 ntBASIC1.69□□□□□ -2.14
MSH6P52701 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.69□□□□□ -2.14
MSH6P52701 AL596276.1-201ENST00000434465 418 ntBASIC1.69□□□□□ -2.14
MSH6P52701 GTF2IP13-201ENST00000438487 386 ntBASIC1.69□□□□□ -2.14
MSH6P52701 AC087343.1-201ENST00000477341 475 ntBASIC1.69□□□□□ -2.14
MSH6P52701 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.69□□□□□ -2.14
MSH6P52701 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.69□□□□□ -2.14
MSH6P52701 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.69□□□□□ -2.14
MSH6P52701 Z84480.1-201ENST00000605131 311 ntBASIC1.69□□□□□ -2.14
MSH6P52701 Z69720.2-201ENST00000624755 279 ntBASIC1.69□□□□□ -2.14
MSH6P52701 SEPT14P19-203ENST00000633205 211 ntBASIC1.69□□□□□ -2.14
MSH6P52701 U4.7-201ENST00000638126 106 ntBASIC1.69□□□□□ -2.14
MSH6P52701 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
MSH6P52701 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
MSH6P52701 Y_RNA.30-201ENST00000362572 97 ntBASIC1.68□□□□□ -2.14
MSH6P52701 RNU6-181P-201ENST00000363225 107 ntBASIC1.68□□□□□ -2.14
MSH6P52701 RNU4-48P-201ENST00000365559 182 ntBASIC1.68□□□□□ -2.14
MSH6P52701 RNU6-1274P-201ENST00000384557 107 ntBASIC1.68□□□□□ -2.14
MSH6P52701 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
MSH6P52701 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.68□□□□□ -2.14
MSH6P52701 USP9YP18-201ENST00000425912 695 ntBASIC1.68□□□□□ -2.14
MSH6P52701 VN1R108P-201ENST00000431580 830 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AL445305.1-201ENST00000432577 575 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.68□□□□□ -2.14
MSH6P52701 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.68□□□□□ -2.14
MSH6P52701 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.68□□□□□ -2.14
MSH6P52701 AL162395.1-201ENST00000457882 422 ntBASIC1.68□□□□□ -2.14
MSH6P52701 RPL30P12-201ENST00000474666 353 ntBASIC1.68□□□□□ -2.14
MSH6P52701 RPL30P1-201ENST00000488676 339 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AC093852.1-201ENST00000503587 266 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 RNU6-445P-201ENST00000516949 107 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.68□□□□□ -2.14
MSH6P52701 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.68□□□□□ -2.14
MSH6P52701 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH6P52701 AL031274.2-201ENST00000599419 203 ntBASIC1.68□□□□□ -2.14
MSH6P52701 SNRPGP17-201ENST00000603780 214 ntBASIC1.68□□□□□ -2.14
MSH6P52701 uc_338.11-201ENST00000619132 160 ntBASIC1.68□□□□□ -2.14
MSH6P52701 AP000770.2-201ENST00000623694 100 ntBASIC1.68□□□□□ -2.14
MSH6P52701 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.68□□□□□ -2.14
MSH6P52701 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.68□□□□□ -2.14
MSH6P52701 Y_RNA.324-201ENST00000365165 102 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RNU6-715P-201ENST00000365204 103 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RNU5E-7P-201ENST00000365290 117 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RNU6-1029P-201ENST00000384109 107 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RNY1P4-201ENST00000384595 115 ntBASIC1.67□□□□□ -2.14
MSH6P52701 MIR758-201ENST00000390227 88 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH6P52701 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.67□□□□□ -2.14
MSH6P52701 AC005534.2-201ENST00000431047 433 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL353689.1-201ENST00000438895 199 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL360221.1-201ENST00000445989 335 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC079448.1-201ENST00000449377 373 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RPS27AP8-201ENST00000452665 445 ntBASIC1.67□□□□□ -2.14
MSH6P52701 RPL23AP3-201ENST00000453844 468 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL353752.1-201ENST00000454946 260 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH6P52701 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
MSH6P52701 LRRC34P2-201ENST00000514850 553 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH6P52701 RNU6-1178P-201ENST00000516674 107 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH6P52701 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH6P52701 AC026271.5-201ENST00000577873 130 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL136363.2-201ENST00000604173 851 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC008945.2-201ENST00000606056 604 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AL359314.1-201ENST00000616913 261 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms