Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.35□□□□□ -2.19
BRCA1P38398 AC138749.5-201ENST00000611461 208 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AC116165.2-201ENST00000616705 206 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AC008133.2-201ENST00000624540 351 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.35□□□□□ -2.19
BRCA1P38398 U4.7-201ENST00000638126 106 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 OR4G2P-201ENST00000328113 903 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 SNORD56.1-201ENST00000362913 68 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 RNA5SP493-201ENST00000364115 91 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 Y_RNA.255-201ENST00000364581 97 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.35□□□□□ -2.19
BRCA1P38398 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC1.35□□□□□ -2.19
BRCA1P38398 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.35□□□□□ -2.19
BRCA1P38398 AC079781.2-201ENST00000446424 169 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 RNU6-377P-201ENST00000515965 102 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 RNA5SP337-201ENST00000517007 109 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.35□□□□□ -2.19
BRCA1P38398 AC073410.2-201ENST00000603240 332 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AL136370.1-201ENST00000608166 691 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 AF246928.1-201ENST00000623768 87 ntBASIC1.35□□□□□ -2.19
BRCA1P38398 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
BRCA1P38398 LINC02555-201ENST00000563933 1951 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 AL442644.1-201ENST00000454390 3105 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 RNU6-1287P-201ENST00000362914 107 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 U8.3-201ENST00000363321 132 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 RNU6-1141P-201ENST00000364520 107 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 RNU6-1060P-201ENST00000384664 107 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 RPS20P15-201ENST00000412792 311 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 MED13P1-201ENST00000428342 171 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 HMGN1P33-201ENST00000432945 451 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.34□□□□□ -2.19
BRCA1P38398 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC1.34□□□□□ -2.19
BRCA1P38398 RNU7-125P-201ENST00000458760 62 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 MTCYBP35-201ENST00000503630 1137 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.34□□□□□ -2.19
BRCA1P38398 AC104010.1-201ENST00000616889 150 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 AC019226.2-201ENST00000625973 424 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 AC007671.2-201ENST00000637344 619 ntBASIC1.34□□□□□ -2.19
BRCA1P38398 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
BRCA1P38398 ZNF680P1-201ENST00000436625 1469 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU5F-6P-201ENST00000362979 116 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU6-1097P-201ENST00000363586 107 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU6-105P-201ENST00000363909 104 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU6-660P-201ENST00000364566 109 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 Y_RNA.332-201ENST00000365271 113 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU5E-5P-201ENST00000365379 116 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 SNORA24.1-201ENST00000384401 135 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.33□□□□□ -2.2
BRCA1P38398 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.33□□□□□ -2.2
BRCA1P38398 AL445305.1-201ENST00000432577 575 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 GPR143P-201ENST00000434155 205 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RPS29P23-201ENST00000458635 123 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU1-86P-201ENST00000516108 154 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU1-107P-201ENST00000516617 154 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 SNORA31.16-201ENST00000516773 139 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.33□□□□□ -2.2
BRCA1P38398 AC233702.2-202ENST00000562547 291 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC025678.1-201ENST00000567861 338 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.33□□□□□ -2.2
BRCA1P38398 AC243960.4-201ENST00000600532 288 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC011458.1-201ENST00000604034 617 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AP000654.2-201ENST00000605633 586 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RMST_7.1-201ENST00000621935 268 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC090517.3-201ENST00000625170 141 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
BRCA1P38398 MIR126-201ENST00000362291 85 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 SNORA20.2-201ENST00000383922 131 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 MIR186-201ENST00000384988 86 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 MIR513A1-201ENST00000385138 129 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 SNORA12-201ENST00000391162 147 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 RNU1-78P-201ENST00000391248 165 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.33□□□□□ -2.2
BRCA1P38398 RPL9P9-202ENST00000466501 579 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC010409.1-201ENST00000487382 476 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC079382.1-201ENST00000493346 557 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC008834.1-201ENST00000511612 175 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.33□□□□□ -2.2
BRCA1P38398 AC115990.1-201ENST00000526957 301 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.33□□□□□ -2.2
BRCA1P38398 AP000763.2-201ENST00000540641 163 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.33□□□□□ -2.2
BRCA1P38398 AC090616.2-202ENST00000584248 222 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 MIR548AC-201ENST00000585049 88 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC008749.1-201ENST00000597650 306 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.33□□□□□ -2.2
BRCA1P38398 RMST_4.1-201ENST00000616886 107 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 AC130454.1-201ENST00000622948 401 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 U6.114-201ENST00000636407 96 ntBASIC1.33□□□□□ -2.2
BRCA1P38398 SNORD115-3-201ENST00000363100 82 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 U3.4-201ENST00000363352 213 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 MIR625-201ENST00000385047 85 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 AC078809.1-201ENST00000427601 140 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.32□□□□□ -2.2
BRCA1P38398 AC013470.1-201ENST00000453438 462 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 MTND3P5-201ENST00000512798 333 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.32□□□□□ -2.2
BRCA1P38398 RNU6-410P-201ENST00000517006 107 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 RNU6-667P-201ENST00000517186 102 ntBASIC1.32□□□□□ -2.2
BRCA1P38398 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms