Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.17□□□□□ -2.06
SIX3O95343 MIR4424-201ENST00000585257 86 ntBASIC2.17□□□□□ -2.06
SIX3O95343 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.17□□□□□ -2.06
SIX3O95343 AC009314.1-201ENST00000603871 304 ntBASIC2.17□□□□□ -2.06
SIX3O95343 MIR8070-201ENST00000616510 88 ntBASIC2.17□□□□□ -2.06
SIX3O95343 AC245060.5-201ENST00000610778 3293 ntBASIC2.16□□□□□ -2.06
SIX3O95343 Y_RNA.378-201ENST00000365652 113 ntBASIC2.16□□□□□ -2.06
SIX3O95343 RPS29P13-201ENST00000402041 169 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AL355497.1-201ENST00000406262 551 ntBASIC2.16□□□□□ -2.06
SIX3O95343 RNU4-53P-201ENST00000410828 140 ntBASIC2.16□□□□□ -2.06
SIX3O95343 DLGAP5P1-201ENST00000430307 464 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 GPM6BP3-201ENST00000442797 145 ntBASIC2.16□□□□□ -2.06
SIX3O95343 MTND3P16-201ENST00000452205 344 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 RN7SKP210-201ENST00000459176 261 ntBASIC2.16□□□□□ -2.06
SIX3O95343 RNU6-1037P-201ENST00000459571 107 ntBASIC2.16□□□□□ -2.06
SIX3O95343 Y_RNA.654-201ENST00000497848 106 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 Y_RNA.704-201ENST00000516851 102 ntBASIC2.16□□□□□ -2.06
SIX3O95343 SNORA31.25-201ENST00000517242 134 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 AL162413.1-201ENST00000603198 110 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AL356157.2-201ENST00000605122 111 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AP000654.2-201ENST00000605633 586 ntBASIC2.16□□□□□ -2.06
SIX3O95343 AL121757.2-201ENST00000611223 313 ntBASIC2.16□□□□□ -2.06
SIX3O95343 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.16□□□□□ -2.06
SIX3O95343 AP000560.1-201ENST00000624150 1937 ntBASIC2.16□□□□□ -2.06
SIX3O95343 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
SIX3O95343 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
SIX3O95343 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.15□□□□□ -2.07
SIX3O95343 AC092268.1-201ENST00000342691 405 ntBASIC2.15□□□□□ -2.07
SIX3O95343 RNU6-1285P-201ENST00000363480 105 ntBASIC2.15□□□□□ -2.07
SIX3O95343 RNU4-75P-201ENST00000364621 146 ntBASIC2.15□□□□□ -2.07
SIX3O95343 SNORA25.9-201ENST00000365087 128 ntBASIC2.15□□□□□ -2.07
SIX3O95343 RNU6-142P-201ENST00000384019 107 ntBASIC2.15□□□□□ -2.07
SIX3O95343 RNU6-38P-201ENST00000384085 107 ntBASIC2.15□□□□□ -2.07
SIX3O95343 HMGN2P39-201ENST00000398005 273 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AL590002.1-201ENST00000406554 418 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.15□□□□□ -2.07
SIX3O95343 USP9YP27-201ENST00000418455 438 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.15□□□□□ -2.07
SIX3O95343 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.15□□□□□ -2.07
SIX3O95343 AC078809.1-201ENST00000427601 140 ntBASIC2.15□□□□□ -2.07
SIX3O95343 DNAJC19P4-201ENST00000440115 345 ntBASIC2.15□□□□□ -2.07
SIX3O95343 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.15□□□□□ -2.07
SIX3O95343 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.15□□□□□ -2.07
SIX3O95343 PRELID3BP1-201ENST00000457142 540 ntBASIC2.15□□□□□ -2.07
SIX3O95343 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.15□□□□□ -2.07
SIX3O95343 RNU6-333P-201ENST00000459117 107 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.15□□□□□ -2.07
SIX3O95343 AC104576.1-201ENST00000524225 88 ntBASIC2.15□□□□□ -2.07
SIX3O95343 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.15□□□□□ -2.07
SIX3O95343 MIR3923-201ENST00000579521 83 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.15□□□□□ -2.07
SIX3O95343 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.15□□□□□ -2.07
SIX3O95343 AC092807.2-201ENST00000609367 243 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC015540.1-201ENST00000615828 501 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC103705.1-201ENST00000619013 241 ntBASIC2.15□□□□□ -2.07
SIX3O95343 AC009831.4-201ENST00000620744 325 ntBASIC2.15□□□□□ -2.07
SIX3O95343 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SIX3O95343 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.15□□□□□ -2.07
SIX3O95343 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SIX3O95343 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SIX3O95343 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SIX3O95343 AC233981.2-201ENST00000611524 1614 ntBASIC2.14□□□□□ -2.07
SIX3O95343 Y_RNA.372-201ENST00000365599 102 ntBASIC2.14□□□□□ -2.07
SIX3O95343 RNU6-214P-201ENST00000384130 107 ntBASIC2.14□□□□□ -2.07
SIX3O95343 MIR29C-201ENST00000385231 88 ntBASIC2.14□□□□□ -2.07
SIX3O95343 MRPS10P2-201ENST00000431226 381 ntBASIC2.14□□□□□ -2.07
SIX3O95343 SNAP23P1-201ENST00000433229 246 ntBASIC2.14□□□□□ -2.07
SIX3O95343 IFNA20P-201ENST00000436840 528 ntBASIC2.14□□□□□ -2.07
SIX3O95343 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.14□□□□□ -2.07
SIX3O95343 MTCO2P3-201ENST00000442543 421 ntBASIC2.14□□□□□ -2.07
SIX3O95343 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.14□□□□□ -2.07
SIX3O95343 U8.21-201ENST00000459536 136 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC055731.1-201ENST00000474387 401 ntBASIC2.14□□□□□ -2.07
SIX3O95343 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.14□□□□□ -2.07
SIX3O95343 RNU6-506P-201ENST00000516553 94 ntBASIC2.14□□□□□ -2.07
SIX3O95343 SNORD60.2-201ENST00000516883 86 ntBASIC2.14□□□□□ -2.07
SIX3O95343 RNU2-19P-201ENST00000517288 84 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.14□□□□□ -2.07
SIX3O95343 AC233702.2-202ENST00000562547 291 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC109446.1-201ENST00000566172 220 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AP001836.1-201ENST00000604675 523 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC018889.1-201ENST00000605372 397 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC099654.12-201ENST00000639868 649 ntBASIC2.14□□□□□ -2.07
SIX3O95343 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.14□□□□□ -2.07
SIX3O95343 AC009541.1-201ENST00000438279 2662 ntBASIC2.14□□□□□ -2.07
SIX3O95343 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.13□□□□□ -2.07
SIX3O95343 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.13□□□□□ -2.07
SIX3O95343 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.13□□□□□ -2.07
SIX3O95343 RNA5SP325-201ENST00000363756 130 ntBASIC2.13□□□□□ -2.07
SIX3O95343 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
SIX3O95343 SNORA12-201ENST00000391162 147 ntBASIC2.13□□□□□ -2.07
SIX3O95343 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.13□□□□□ -2.07
SIX3O95343 AL356320.1-201ENST00000429616 163 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms