Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL691447.3-201ENST00000635020 330 ntBASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMCH1Q9UPQ0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 MIR26A1-201ENST00000362205 77 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.31-201ENST00000362574 102 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.48-201ENST00000362710 103 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 SNORD32A-201ENST00000364805 84 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 RNU1-140P-201ENST00000365040 165 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA33.2-201ENST00000365413 134 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA22B-201ENST00000383876 138 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 MTCYBP10-201ENST00000424905 650 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC078809.1-201ENST00000427601 140 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC022018.1-201ENST00000430685 241 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 GSTA11P-201ENST00000452866 669 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 RN7SL297P-201ENST00000483161 293 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC104564.1-201ENST00000493028 407 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC091826.1-201ENST00000514065 313 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA25.10-201ENST00000515926 124 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 RNU7-4P-201ENST00000516961 62 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 ZNF861P-201ENST00000588126 639 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC016925.2-201ENST00000605108 242 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AC096577.2-201ENST00000611455 153 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 MIR6733-201ENST00000635723 61 ntBASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMCH1Q9UPQ0 AP000560.1-201ENST00000624150 1937 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MIR887-201ENST00000401258 79 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AL138885.1-201ENST00000405921 675 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 RN7SKP61-201ENST00000410642 295 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC007098.1-201ENST00000420122 367 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AL353997.1-201ENST00000432936 108 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 RPL39P29-201ENST00000447779 157 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 RPS27P26-201ENST00000494583 239 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC016632.1-201ENST00000503994 196 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 SNORA31.26-201ENST00000517250 137 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC109329.1-201ENST00000518744 317 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC115990.1-201ENST00000526957 301 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AL590705.4-201ENST00000532209 134 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MIR5701-3-201ENST00000578890 82 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MIR5701-1-201ENST00000585138 82 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC060766.3-201ENST00000591442 263 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MIR5701-2-201ENST00000615634 82 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 MIR8057-201ENST00000620957 69 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AC233981.2-201ENST00000611524 1614 ntBASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.29□□□□□ -1.88
LIMCH1Q9UPQ0 AL161431.1-201ENST00000618966 4205 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 Y_RNA.132-201ENST00000363421 102 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-1286P-201ENST00000383871 107 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-639P-201ENST00000384074 107 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-1032P-201ENST00000384100 107 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 MIR625-201ENST00000385047 85 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6-308P-201ENST00000390957 107 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 MCFD2P1-201ENST00000417812 300 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 AL358075.3-201ENST00000426289 226 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 MTND4P19-201ENST00000446659 478 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 RPS15AP11-201ENST00000594193 385 ntBASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LIMCH1Q9UPQ0 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC092268.1-201ENST00000342691 405 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-1010P-201ENST00000362757 107 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.216-201ENST00000364205 93 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-99P-201ENST00000364721 107 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU4-9P-201ENST00000364951 139 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-1027P-201ENST00000383998 107 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-968P-201ENST00000384076 107 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AL512633.1-201ENST00000399931 655 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AL031121.1-201ENST00000406553 254 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA11.1-201ENST00000408133 129 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-1156P-201ENST00000410365 100 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 CYCSP48-201ENST00000417124 323 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC138623.1-201ENST00000418060 216 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms