Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC005609.4-201ENST00000625071 447 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS35Q96QK1 AL356292.1-201ENST00000283110 373 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU4-15P-201ENST00000362613 141 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU6-1164P-201ENST00000364428 107 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU5A-6P-201ENST00000384136 116 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 MIR597-201ENST00000384968 97 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 MIR9-3-201ENST00000385084 90 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RPS29P13-201ENST00000402041 169 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 MIR1289-2-201ENST00000408360 111 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 MTCYBP8-201ENST00000422855 651 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RPL7P54-201ENST00000438336 674 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU7-167P-201ENST00000459160 62 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RPL23AP42-201ENST00000471152 471 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC145146.1-201ENST00000496370 254 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC022447.4-201ENST00000504053 364 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC093259.1-201ENST00000509755 300 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU6-991P-201ENST00000516168 107 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC069113.1-201ENST00000517763 267 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 TRAV32-201ENST00000553993 340 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 MIR3136-201ENST00000583498 78 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 VN1R107P-201ENST00000601784 209 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AL078605.1-201ENST00000603529 500 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AL391646.1-201ENST00000603860 190 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.81□□□□□ -2.12
VPS35Q96QK1 U2.17-201ENST00000611454 95 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 MIR6845-201ENST00000613182 61 ntBASIC1.81□□□□□ -2.12
VPS35Q96QK1 AP000560.1-201ENST00000624150 1937 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 RNU6-996P-201ENST00000365438 107 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 RNU6-827P-201ENST00000365553 106 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 Y_RNA.553-201ENST00000384670 102 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 SNORA26.9-201ENST00000391322 122 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 MIR1294-201ENST00000408503 142 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 HMGN2P19-201ENST00000425149 265 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC010975.2-201ENST00000427781 588 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 MTATP6P17-201ENST00000431030 672 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 AK3P2-201ENST00000507976 429 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 RNU6-295P-201ENST00000516901 104 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AP005660.1-201ENST00000522972 293 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC103996.1-201ENST00000555468 102 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 MIR3941-201ENST00000582572 103 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AC119751.7-201ENST00000600494 245 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 AL773524.1-201ENST00000614065 229 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.8□□□□□ -2.12
VPS35Q96QK1 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.8□□□□□ -2.12
VPS35Q96QK1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
VPS35Q96QK1 RNU1-58P-201ENST00000362413 163 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 Y_RNA.77-201ENST00000362962 107 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 Y_RNA.99-201ENST00000363138 105 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 SNORD32B-201ENST00000364460 84 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 SNORD32A-201ENST00000364805 84 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VPS35Q96QK1 RNU6-1103P-201ENST00000384150 107 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 SNORA8-201ENST00000384574 139 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 RNU11-3P-201ENST00000391111 133 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 SNORA12-201ENST00000391162 147 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC244636.1-201ENST00000421152 228 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AL590135.1-201ENST00000422215 156 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC019205.3-201ENST00000424573 156 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 MTCO2P19-201ENST00000427513 598 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 SNAP23P1-201ENST00000433229 246 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC244670.1-201ENST00000436879 112 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC003989.2-201ENST00000440224 169 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 MTCO1P19-201ENST00000443487 500 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC007677.1-201ENST00000445757 515 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC016700.2-201ENST00000446011 156 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 RPL23AP6-201ENST00000446637 472 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC073415.1-201ENST00000449240 153 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 RNU7-180P-201ENST00000459240 63 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC015911.1-201ENST00000495111 156 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 RPS29P11-201ENST00000496507 171 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC010424.1-201ENST00000506336 297 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 RN7SKP298-201ENST00000515950 94 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms