Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 RPL23AP46-201ENST00000438548 490 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.644-201ENST00000459006 113 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 AC090515.1-201ENST00000465295 476 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 AC006499.6-201ENST00000511169 607 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.674-201ENST00000516362 113 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 SCARNA11.3-201ENST00000517276 130 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 MIR3199-1-201ENST00000582434 88 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 AC114781.5-201ENST00000615297 108 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RNU6-545P-201ENST00000362681 104 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.150-201ENST00000363562 102 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RNU6-1274P-201ENST00000384557 107 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 U3.40-201ENST00000408706 208 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RPL30P4-201ENST00000429309 333 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RPS12P18-201ENST00000442381 270 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 SUMO1P2-201ENST00000452524 304 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RNU6-191P-201ENST00000516295 94 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 MIR7702-201ENST00000621931 59 ntBASIC3.25□□□□□ -1.89
CCDC140Q96MF4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC140Q96MF4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 UBE2WP1-201ENST00000362030 340 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 MIR383-201ENST00000362257 73 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RNU6-944P-201ENST00000364023 107 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.270-201ENST00000364693 104 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RNY4P28-201ENST00000365281 93 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 AC068538.1-201ENST00000376856 336 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 MIR548B-201ENST00000385247 97 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 MIR1183-201ENST00000408856 89 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RNA5SP246-201ENST00000458909 119 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RNU7-14P-201ENST00000459331 62 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.638-201ENST00000459374 113 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RPL27AP5-201ENST00000469428 449 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 RNU6-436P-201ENST00000516171 114 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 MIR6830-201ENST00000636015 70 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 AC058791.1-201ENST00000608412 3198 ntBASIC3.24□□□□□ -1.89
CCDC140Q96MF4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC140Q96MF4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 SNORA67.2-201ENST00000384300 149 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC024067.1-201ENST00000426199 223 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 RN7SL585P-201ENST00000470538 280 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC109327.1-201ENST00000471666 403 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC091167.1-201ENST00000492017 396 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 PARP4P3-201ENST00000510265 317 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 RNU2-12P-201ENST00000517216 168 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 RNU6-586P-201ENST00000517265 104 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 MIR3653-201ENST00000625572 110 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC000403.1-201ENST00000613696 3585 ntBASIC3.23□□□□□ -1.89
CCDC140Q96MF4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC140Q96MF4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 Z82217.1-201ENST00000625157 8149 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 MIR411-201ENST00000362239 96 ntBASIC3.22□□□□□ -1.89
CCDC140Q96MF4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC140Q96MF4 AC107393.1-201ENST00000512403 346 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 137.2 ms