Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC139792.3-201ENST00000623525 224 ntBASIC1.61□□□□□ -2.15
CCDC54Q8NEL0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AC002543.1-201ENST00000299783 1954 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RNU4-42P-201ENST00000364738 142 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.378-201ENST00000365652 113 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 XGY1-201ENST00000381172 446 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 MIR518A2-201ENST00000384966 87 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RNU2-2P-201ENST00000410396 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RPS20P15-201ENST00000412792 311 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RNU6-377P-201ENST00000515965 102 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AP005597.4-201ENST00000526762 229 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AK6P1-201ENST00000540219 478 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AP000763.2-201ENST00000540641 163 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AC018630.3-201ENST00000542637 96 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 HSBP1P1-201ENST00000555205 166 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AL031274.2-201ENST00000599419 203 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 AC103591.3-201ENST00000608684 209 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.15-201ENST00000611544 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.16-201ENST00000613119 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.12-201ENST00000613778 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.20-201ENST00000613956 192 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.9-201ENST00000615427 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.11-201ENST00000616345 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.2-201ENST00000616535 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 uc_338.34-201ENST00000617467 174 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.3-201ENST00000617785 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.19-201ENST00000618602 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 RNU2-1-201ENST00000618664 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.6-201ENST00000619225 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.5-201ENST00000619465 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 U2.10-201ENST00000620268 191 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 SNORA43.4-201ENST00000629559 138 ntBASIC1.6□□□□□ -2.15
CCDC54Q8NEL0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 MTND4P14-201ENST00000435799 1354 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 RNU6-1164P-201ENST00000364428 107 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.480-201ENST00000384364 102 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 SNORA67.3-201ENST00000384366 140 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 RNU6-1222P-201ENST00000384615 107 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 RNU6-648P-201ENST00000410190 107 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.597-201ENST00000410463 100 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 RNA5SP508-201ENST00000411327 119 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AC016907.1-201ENST00000419483 435 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AL591043.1-201ENST00000432461 424 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 PRELID3BP1-201ENST00000457142 540 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 MTCO3P38-201ENST00000468910 766 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 CKS1BP2-201ENST00000497342 240 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 HMGB1P35-201ENST00000503360 598 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 ANXA2P1-201ENST00000505539 926 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 RN7SKP256-201ENST00000517201 314 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 VN1R80P-201ENST00000597126 338 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AC012507.3-201ENST00000603556 477 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 AC007792.1-201ENST00000623023 402 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 MIR6863-201ENST00000636112 90 ntBASIC1.59□□□□□ -2.15
CCDC54Q8NEL0 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.59□□□□□ -2.16
CCDC54Q8NEL0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 SNORD32B-201ENST00000364460 84 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 SNORA69-201ENST00000383895 132 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 SNORA36A-201ENST00000384221 132 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 SNORA3.2-201ENST00000408221 125 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC244636.1-201ENST00000421152 228 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 RPL23AP95-201ENST00000426806 265 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AL121601.2-201ENST00000438019 707 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 HSPE1P21-201ENST00000438283 308 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AL031274.1-201ENST00000450334 232 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC012308.1-201ENST00000451232 178 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC083798.1-201ENST00000472671 131 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 RPL38P4-201ENST00000502376 214 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC019235.1-201ENST00000503847 207 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 MIR449C-201ENST00000516047 92 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC022616.8-201ENST00000533569 253 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 DEFB122-202ENST00000569013 197 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 BNIP3P16-201ENST00000589779 534 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC107304.1-201ENST00000604229 296 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC018889.1-201ENST00000605372 397 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 RNU6-85P-201ENST00000605989 107 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC080013.6-201ENST00000606185 215 ntBASIC1.58□□□□□ -2.16
CCDC54Q8NEL0 AC008121.3-201ENST00000618726 433 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms