Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SH3RF1Q7Z6J0 FAM35BP-202ENST00000497389 3337 ntBASIC4.74□□□□□ -1.65
SH3RF1Q7Z6J0 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AC068254.2-201ENST00000623938 3577 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ADAM3A-203ENST00000461344 2157 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 RNU6-799P-201ENST00000363567 107 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 RNU6-884P-201ENST00000363889 107 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 RNU6-801P-201ENST00000364087 105 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 RNU4-10P-201ENST00000364383 140 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 MIR208B-201ENST00000401172 77 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 MIR888-201ENST00000401186 77 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AL356535.1-201ENST00000440335 398 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AC010469.1-201ENST00000463864 576 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 SNORA31.16-201ENST00000516773 139 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AC090049.2-201ENST00000550377 109 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 NACAP3-201ENST00000552100 481 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AL451007.1-201ENST00000595491 289 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 AL354798.1-201ENST00000622505 329 ntBASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SH3RF1Q7Z6J0 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 MIR493-201ENST00000385254 89 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 EI24P2-201ENST00000397776 1076 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 MIR1179-201ENST00000408703 91 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AC099548.1-201ENST00000421443 426 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AC063976.4-201ENST00000421971 163 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AL121914.1-201ENST00000450188 156 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AC090525.1-201ENST00000479116 478 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AL592156.1-201ENST00000508758 304 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 LARP7P3-201ENST00000579888 337 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 SNORA51-201ENST00000606420 132 ntBASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SH3RF1Q7Z6J0 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AC134026.1-201ENST00000623249 2239 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 Y_RNA.24-201ENST00000362508 103 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 RNA5SP119-201ENST00000362715 117 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 SNORD74.4-201ENST00000364129 80 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 SNORA26.5-201ENST00000391215 123 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 YPEL5P1-201ENST00000419731 367 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AL353748.1-201ENST00000440753 474 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AC007179.3-201ENST00000604976 235 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 AL391261.4-201ENST00000616012 481 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 MIR7702-201ENST00000621931 59 ntBASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SH3RF1Q7Z6J0 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 MIR7-3-201ENST00000384898 110 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 MIR616-201ENST00000385293 97 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 U3.26-201ENST00000391236 204 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 NDUFB4P6-201ENST00000436819 366 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC092991.1-201ENST00000477176 376 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 RPL23AP70-201ENST00000483361 460 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC025445.1-201ENST00000502728 300 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 MIR3200-201ENST00000580767 85 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC090897.2-201ENST00000581715 130 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 MIR3136-201ENST00000583498 78 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC025946.2-201ENST00000603398 234 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 U7.2-201ENST00000607576 63 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC016588.2-201ENST00000632484 3021 ntBASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SH3RF1Q7Z6J0 AC002543.1-201ENST00000299783 1954 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms