Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-862P-201ENST00000362804 105 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 RNU6-438P-201ENST00000365561 103 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 RNU6-35P-201ENST00000384530 107 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
USP54Q70EL1 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.46□□□□□ -2.34
USP54Q70EL1 RNU6-1054P-201ENST00000411293 104 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC019070.1-201ENST00000415008 1024 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.46□□□□□ -2.34
USP54Q70EL1 AC010099.3-201ENST00000423896 409 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.46□□□□□ -2.34
USP54Q70EL1 AC003071.1-201ENST00000451219 789 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 snoU109.2-201ENST00000459316 135 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 RAP1BP2-201ENST00000478270 544 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AL157871.3-201ENST00000557231 293 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 MIR4293-201ENST00000584305 78 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 U6.42-201ENST00000618440 107 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC016831.2-201ENST00000417179 352 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC114482.1-201ENST00000418010 247 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC123900.1-201ENST00000420390 96 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.46□□□□□ -2.34
USP54Q70EL1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.46□□□□□ -2.34
USP54Q70EL1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.46□□□□□ -2.34
USP54Q70EL1 MTND1P16-201ENST00000465177 898 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 MED28P2-201ENST00000475771 317 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AC021451.1-201ENST00000523498 1129 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AL358072.1-201ENST00000604156 575 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 AL355816.2-201ENST00000610049 647 ntBASIC0.46□□□□□ -2.34
USP54Q70EL1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.46□□□□□ -2.34
USP54Q70EL1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.46□□□□□ -2.34
USP54Q70EL1 AL079342.2-201ENST00000403367 482 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 RNU2-64P-201ENST00000411315 191 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 MTCYBP5-201ENST00000423752 1135 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 MTCYBP42-201ENST00000444653 1130 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 RPS26P45-201ENST00000471748 340 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.45□□□□□ -2.34
USP54Q70EL1 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.45□□□□□ -2.34
USP54Q70EL1 RNU5F-2P-201ENST00000516066 82 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 RNU6-1225P-201ENST00000516336 65 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 RNU6-1315P-201ENST00000517187 99 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 AC120349.3-201ENST00000624377 529 ntBASIC0.45□□□□□ -2.34
USP54Q70EL1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.45□□□□□ -2.34
USP54Q70EL1 RNU6-354P-201ENST00000383862 107 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 RNU6-610P-201ENST00000384264 107 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 MIR10B-201ENST00000385011 110 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.44□□□□□ -2.34
USP54Q70EL1 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.44□□□□□ -2.34
USP54Q70EL1 AC244023.1-201ENST00000426884 112 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 RNU6-64P-201ENST00000517119 105 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 EIF4A1P12-201ENST00000551910 141 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 AC242498.1-201ENST00000604134 111 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 MIR8084-201ENST00000614105 89 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 AC243994.1-201ENST00000618627 109 ntBASIC0.44□□□□□ -2.34
USP54Q70EL1 SNORA4.1-201ENST00000364263 144 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 MIR200A-201ENST00000384875 90 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AL117342.1-201ENST00000404861 406 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AL359704.1-201ENST00000411586 781 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC068533.2-201ENST00000411872 306 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.43□□□□□ -2.34
USP54Q70EL1 AL157398.1-201ENST00000452981 186 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 snoU13.30-201ENST00000458951 104 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 snoU13.27-201ENST00000459278 104 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 HMGN1P10-201ENST00000474557 553 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.43□□□□□ -2.34
USP54Q70EL1 HMGB1P30-201ENST00000492455 606 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC091435.1-201ENST00000505442 584 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC005741.1-201ENST00000511094 432 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 RNU4-57P-201ENST00000515980 135 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 RNA5SP503-201ENST00000517047 117 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC090142.3-201ENST00000519012 385 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 BNIP3P6-201ENST00000549284 499 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC078795.2-201ENST00000602835 1252 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 U3.8-201ENST00000363675 217 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 RNU6-207P-201ENST00000384137 107 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 MIR32-201ENST00000384965 70 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 Y_RNA.623-201ENST00000411128 95 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.43□□□□□ -2.34
USP54Q70EL1 MTCO3P41-201ENST00000414801 328 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 MTCO1P21-201ENST00000416634 589 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 SUMO2P5-201ENST00000506790 245 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 MTCO3P28-201ENST00000513351 515 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 SUMO2P18-201ENST00000518873 252 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 AC078880.5-201ENST00000617845 421 ntBASIC0.43□□□□□ -2.34
USP54Q70EL1 RNU6-212P-201ENST00000362642 104 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 Y_RNA.132-201ENST00000363421 102 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 RNU1-96P-201ENST00000364163 162 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 MTCO1P17-201ENST00000411522 491 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AC013262.1-201ENST00000426710 252 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.42□□□□□ -2.34
USP54Q70EL1 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.42□□□□□ -2.34
USP54Q70EL1 AL669831.1-202ENST00000428504 417 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 LARP1BP3-201ENST00000437229 869 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AC073910.1-201ENST00000445047 438 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 SNORA31.4-201ENST00000516049 129 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.42□□□□□ -2.34
USP54Q70EL1 AC109446.1-201ENST00000566172 220 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AC069545.1-201ENST00000605671 358 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AC022893.3-201ENST00000607665 437 ntBASIC0.42□□□□□ -2.34
USP54Q70EL1 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms