Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AP005660.1-201ENST00000522972 293 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 COPS8P3-201ENST00000526024 482 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 MIR5583-1-201ENST00000580941 59 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 MIR3974-201ENST00000637126 96 ntBASIC1.93□□□□□ -2.1
CCDC40Q4G0X9 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNU6-1141P-201ENST00000364520 107 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNU6-517P-201ENST00000384362 110 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNU11-3P-201ENST00000391111 133 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 SNORA40.18-201ENST00000391200 128 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MIR1294-201ENST00000408503 142 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC090960.1-201ENST00000421072 306 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MTCYBP8-201ENST00000422855 651 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AL645568.3-201ENST00000433683 316 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNU7-167P-201ENST00000459160 62 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC079140.5-201ENST00000507882 310 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNA5SP182-201ENST00000516064 82 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 RNU6-991P-201ENST00000516168 107 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC026407.1-201ENST00000518369 204 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AL356057.1-201ENST00000533798 831 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AP000873.5-201ENST00000533906 236 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 HIF1AP1-201ENST00000553642 175 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 TRAV32-201ENST00000553993 340 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC103996.1-201ENST00000555468 102 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MIR4298-201ENST00000584380 73 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 BNIP3P25-201ENST00000596023 559 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 VN1R107P-201ENST00000601784 209 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC116312.1-201ENST00000606841 314 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 AC005609.4-201ENST00000625071 447 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MTND4P14-201ENST00000435799 1354 ntBASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC40Q4G0X9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 RNU1-58P-201ENST00000362413 163 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 SNORD114-1-201ENST00000362705 72 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 SNORD32B-201ENST00000364460 84 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 RNU6-827P-201ENST00000365553 106 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 SNORA12-201ENST00000391162 147 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 RNU7-63P-201ENST00000459054 62 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AC145146.1-201ENST00000496370 254 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AC010928.2-201ENST00000588017 287 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AC119751.7-201ENST00000600494 245 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AL391646.1-201ENST00000603860 190 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AC009318.2-201ENST00000610917 651 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 AP000560.1-201ENST00000624150 1937 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 ELL2P3-201ENST00000457883 1602 ntBASIC1.91□□□□□ -2.1
CCDC40Q4G0X9 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.99-201ENST00000363138 105 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 SNORD32A-201ENST00000364805 84 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 RNU6-142P-201ENST00000384019 107 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 RNU5A-6P-201ENST00000384136 116 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 RNU6-1103P-201ENST00000384150 107 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.553-201ENST00000384670 102 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AF228730.1-201ENST00000397972 663 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC073464.1-201ENST00000429823 534 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 SNAP23P1-201ENST00000433229 246 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC244670.1-201ENST00000436879 112 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 MTCO1P19-201ENST00000443487 500 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 RPL23AP63-201ENST00000498752 471 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AK3P2-201ENST00000507976 429 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC010493.1-201ENST00000513479 292 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 MIR449C-201ENST00000516047 92 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 SNORA31.16-201ENST00000516773 139 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 MIR3136-201ENST00000583498 78 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 AC073648.5-201ENST00000603502 305 ntBASIC1.9□□□□□ -2.11
CCDC40Q4G0X9 SNORD48-201ENST00000364953 64 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AL590135.1-201ENST00000422215 156 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC019205.3-201ENST00000424573 156 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 MTCO2P19-201ENST00000427513 598 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC016700.2-201ENST00000446011 156 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC073415.1-201ENST00000449240 153 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 RNU7-180P-201ENST00000459240 63 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms