Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
COL4A3Q01955 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A3Q01955 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
COL4A3Q01955 Y_RNA.83-201ENST00000363005 113 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 Y_RNA.541-201ENST00000384640 113 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 MIR1298-201ENST00000408783 112 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 Y_RNA.602-201ENST00000410535 92 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AL139156.1-201ENST00000412785 841 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.2□□□□□ -1.9
COL4A3Q01955 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A3Q01955 RPL23AP75-201ENST00000491601 451 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A3Q01955 CYCSP39-201ENST00000565821 309 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 MIR4643-201ENST00000577473 78 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AC060766.3-201ENST00000591442 263 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 AC007785.2-201ENST00000598627 1916 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 AC009541.1-201ENST00000438279 2662 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COL4A3Q01955 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 SNORD113-8-201ENST00000363497 74 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 RNU6-336P-201ENST00000364891 107 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 RNU6-746P-201ENST00000384112 109 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 SNORA70B-201ENST00000384210 135 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 RNU6-886P-201ENST00000384319 105 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 SNORA19-201ENST00000384737 128 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 Y_RNA.581-201ENST00000391017 97 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A3Q01955 RPL27AP8-201ENST00000424277 446 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AL445305.1-201ENST00000432577 575 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.2□□□□□ -1.9
COL4A3Q01955 snoU13.26-201ENST00000459452 105 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AC010401.1-201ENST00000463867 348 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A3Q01955 AC117440.1-201ENST00000474107 571 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A3Q01955 SNORA70.16-201ENST00000516390 95 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 MRPS36P4-201ENST00000534436 298 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AC023824.2-201ENST00000566185 400 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 MIR4659A-201ENST00000580269 81 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 LINC00901.1-201ENST00000617252 152 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 AC099506.2-201ENST00000623074 221 ntBASIC3.2□□□□□ -1.9
COL4A3Q01955 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
COL4A3Q01955 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.2□□□□□ -1.9
COL4A3Q01955 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.2□□□□□ -1.9
COL4A3Q01955 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
COL4A3Q01955 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.19□□□□□ -1.9
COL4A3Q01955 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.19□□□□□ -1.9
COL4A3Q01955 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A3Q01955 RNU6-1266P-201ENST00000362794 105 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 RNU6-335P-201ENST00000364563 113 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 Y_RNA.793-201ENST00000411222 111 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 Z82188.1-201ENST00000436709 154 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
COL4A3Q01955 RPS12P18-201ENST00000442381 270 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 AC009237.8-201ENST00000445492 379 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.19□□□□□ -1.9
COL4A3Q01955 Y_RNA.644-201ENST00000459006 113 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 SNORD108-201ENST00000459332 71 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 TOMM22P6-201ENST00000465035 409 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 RPL31P13-201ENST00000484151 370 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 HMGB1P22-201ENST00000505315 124 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 RNU6-991P-201ENST00000516168 107 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 Y_RNA.674-201ENST00000516362 113 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A3Q01955 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.19□□□□□ -1.9
COL4A3Q01955 U6.99-201ENST00000637524 83 ntBASIC3.19□□□□□ -1.9
COL4A3Q01955 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A3Q01955 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A3Q01955 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A3Q01955 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A3Q01955 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A3Q01955 RNU6-1301P-201ENST00000362724 104 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 SNORA71.1-201ENST00000364523 117 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 RNU4-9P-201ENST00000364951 139 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 RNU6-741P-201ENST00000383889 107 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 RNU6-937P-201ENST00000384325 106 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A3Q01955 AL139281.1-201ENST00000422120 335 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 AC092047.1-201ENST00000424997 240 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 RPS6P12-201ENST00000432491 726 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 snoU13.4-201ENST00000458916 104 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 AC010265.1-201ENST00000513509 211 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 SERF1AP1-201ENST00000514575 187 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 MIR4782-201ENST00000577987 79 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A3Q01955 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 U7.8-201ENST00000619968 63 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 AC027309.3-201ENST00000623419 351 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A3Q01955 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A3Q01955 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms