Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL627390.1-201ENST00000396055 340 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC009310.1-201ENST00000414414 451 ntBASIC1.56□□□□□ -2.16
RFX3P48380 VN1R36P-201ENST00000414936 291 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AL603825.1-201ENST00000438481 80 ntBASIC1.56□□□□□ -2.16
RFX3P48380 PRPS1P1-201ENST00000445305 876 ntBASIC1.56□□□□□ -2.16
RFX3P48380 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.56□□□□□ -2.16
RFX3P48380 C1DP4-201ENST00000455429 424 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AL356010.1-201ENST00000456364 102 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.56□□□□□ -2.16
RFX3P48380 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.56□□□□□ -2.16
RFX3P48380 COPS8P3-201ENST00000526024 482 ntBASIC1.56□□□□□ -2.16
RFX3P48380 CBX3P4-201ENST00000538909 354 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.56□□□□□ -2.16
RFX3P48380 AL391840.1-201ENST00000571144 367 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC008088.1-201ENST00000580993 280 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC040904.1-201ENST00000590850 223 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC091805.2-201ENST00000603848 235 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AL356157.2-201ENST00000605122 111 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC018889.1-201ENST00000605372 397 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC087752.4-201ENST00000605911 462 ntBASIC1.56□□□□□ -2.16
RFX3P48380 MIR502-201ENST00000606349 86 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AP001596.2-201ENST00000608410 312 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC008147.4-201ENST00000617570 1204 ntBASIC1.56□□□□□ -2.16
RFX3P48380 U1.36-201ENST00000620684 176 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC097372.5-201ENST00000623665 376 ntBASIC1.56□□□□□ -2.16
RFX3P48380 AC005609.4-201ENST00000625071 447 ntBASIC1.56□□□□□ -2.16
RFX3P48380 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
RFX3P48380 AP000560.1-201ENST00000624150 1937 ntBASIC1.56□□□□□ -2.16
RFX3P48380 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
RFX3P48380 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
RFX3P48380 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-37P-201ENST00000362692 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-11P-201ENST00000364234 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU4-42P-201ENST00000364738 142 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-25P-201ENST00000383873 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-1-201ENST00000383898 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-48P-201ENST00000384161 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-36P-201ENST00000384172 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-4P-201ENST00000384205 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-5P-201ENST00000384238 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-3P-201ENST00000384314 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-16P-201ENST00000384385 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-15P-201ENST00000384534 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-1127P-201ENST00000384580 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-2-201ENST00000384627 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-29P-201ENST00000384637 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-9-201ENST00000384776 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-33P-201ENST00000384793 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RN7SKP142-201ENST00000411236 328 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.55□□□□□ -2.16
RFX3P48380 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.55□□□□□ -2.16
RFX3P48380 MTCO2P11-201ENST00000431069 680 ntBASIC1.55□□□□□ -2.16
RFX3P48380 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.55□□□□□ -2.16
RFX3P48380 MTND4P32-201ENST00000437189 1237 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RPS27AP8-201ENST00000452665 445 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC013470.1-201ENST00000453438 462 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.55□□□□□ -2.16
RFX3P48380 BET1P1-201ENST00000482276 359 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC098862.1-201ENST00000504991 413 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.55□□□□□ -2.16
RFX3P48380 ARL2BPP4-201ENST00000506854 471 ntBASIC1.55□□□□□ -2.16
RFX3P48380 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.55□□□□□ -2.16
RFX3P48380 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.55□□□□□ -2.16
RFX3P48380 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.55□□□□□ -2.16
RFX3P48380 RNU2-69P-201ENST00000516061 100 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.55□□□□□ -2.16
RFX3P48380 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.55□□□□□ -2.16
RFX3P48380 SUB1P2-201ENST00000556401 297 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.55□□□□□ -2.16
RFX3P48380 MIR3683-201ENST00000580847 82 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC103987.3-201ENST00000582071 292 ntBASIC1.55□□□□□ -2.16
RFX3P48380 RNU6-6P-201ENST00000606623 107 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC073114.1-201ENST00000612027 490 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC078883.4-201ENST00000623218 367 ntBASIC1.55□□□□□ -2.16
RFX3P48380 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.55□□□□□ -2.16
RFX3P48380 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
RFX3P48380 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
RFX3P48380 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
RFX3P48380 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
RFX3P48380 RNA5SP363-201ENST00000365072 115 ntBASIC1.54□□□□□ -2.16
RFX3P48380 Y_RNA.399-201ENST00000383955 105 ntBASIC1.54□□□□□ -2.16
RFX3P48380 SNORD116-8-201ENST00000384365 95 ntBASIC1.54□□□□□ -2.16
RFX3P48380 SNORD70.1-201ENST00000391007 85 ntBASIC1.54□□□□□ -2.16
RFX3P48380 RPS20P15-201ENST00000412792 311 ntBASIC1.54□□□□□ -2.16
RFX3P48380 MTATP6P18-201ENST00000417994 673 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC243964.1-201ENST00000441814 261 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.54□□□□□ -2.16
RFX3P48380 AC010493.1-201ENST00000513479 292 ntBASIC1.54□□□□□ -2.16
RFX3P48380 RNU5F-2P-201ENST00000516066 82 ntBASIC1.54□□□□□ -2.16
RFX3P48380 RNVU1-2-201ENST00000516326 135 ntBASIC1.54□□□□□ -2.16
RFX3P48380 RNU6-250P-201ENST00000516958 103 ntBASIC1.54□□□□□ -2.16
RFX3P48380 RNU6-430P-201ENST00000517078 107 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.54□□□□□ -2.16
RFX3P48380 AC007834.2-201ENST00000536310 343 ntBASIC1.54□□□□□ -2.16
RFX3P48380 MIR4255-201ENST00000579351 72 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.54□□□□□ -2.16
RFX3P48380 MIR3136-201ENST00000583498 78 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC010928.2-201ENST00000588017 287 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC008752.3-201ENST00000588113 712 ntBASIC1.54□□□□□ -2.16
RFX3P48380 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms