Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC020895.1-201ENST00000595362 272 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AL606490.9-201ENST00000603331 271 ntBASIC3.32□□□□□ -1.88
MSX2P35548 SNORA51-201ENST00000606420 132 ntBASIC3.32□□□□□ -1.88
MSX2P35548 MIR6134-201ENST00000617606 109 ntBASIC3.32□□□□□ -1.88
MSX2P35548 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.32□□□□□ -1.88
MSX2P35548 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.32□□□□□ -1.88
MSX2P35548 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSX2P35548 AC007496.3-201ENST00000624987 3443 ntBASIC3.32□□□□□ -1.88
MSX2P35548 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX2P35548 AC093908.1-201ENST00000623125 8092 ntBASIC3.31□□□□□ -1.88
MSX2P35548 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.31□□□□□ -1.88
MSX2P35548 SRP72P2-201ENST00000344851 1979 ntBASIC3.31□□□□□ -1.88
MSX2P35548 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX2P35548 AL353743.1-202ENST00000431724 1695 ntBASIC3.31□□□□□ -1.88
MSX2P35548 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX2P35548 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 MIR411-201ENST00000362239 96 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNA5SP361-201ENST00000362686 118 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNU6-879P-201ENST00000364328 108 ntBASIC3.31□□□□□ -1.88
MSX2P35548 Y_RNA.286-201ENST00000364813 102 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNU1-100P-201ENST00000365255 165 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNU6-746P-201ENST00000384112 109 ntBASIC3.31□□□□□ -1.88
MSX2P35548 U8.10-201ENST00000384260 133 ntBASIC3.31□□□□□ -1.88
MSX2P35548 Y_RNA.464-201ENST00000384282 110 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNU6-1035P-201ENST00000384477 107 ntBASIC3.31□□□□□ -1.88
MSX2P35548 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.31□□□□□ -1.88
MSX2P35548 Y_RNA.793-201ENST00000411222 111 ntBASIC3.31□□□□□ -1.88
MSX2P35548 DBIP2-201ENST00000419076 262 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AC007389.2-201ENST00000434630 306 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.31□□□□□ -1.88
MSX2P35548 AC007969.2-201ENST00000441891 191 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX2P35548 AC096638.1-201ENST00000444678 216 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.31□□□□□ -1.88
MSX2P35548 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AC021205.2-201ENST00000480069 347 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RPL26P26-201ENST00000480251 434 ntBASIC3.31□□□□□ -1.88
MSX2P35548 RNU6-928P-201ENST00000516876 104 ntBASIC3.31□□□□□ -1.88
MSX2P35548 MIR4286-201ENST00000580651 93 ntBASIC3.31□□□□□ -1.88
MSX2P35548 MIR4423-201ENST00000580922 80 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AC012468.1-201ENST00000604888 430 ntBASIC3.31□□□□□ -1.88
MSX2P35548 AC006133.1-201ENST00000617106 264 ntBASIC3.31□□□□□ -1.88
MSX2P35548 U4.6-201ENST00000621618 127 ntBASIC3.31□□□□□ -1.88
MSX2P35548 SNORA50A-202ENST00000629536 136 ntBASIC3.31□□□□□ -1.88
MSX2P35548 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.31□□□□□ -1.88
MSX2P35548 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 AC022336.2-201ENST00000568966 2538 ntBASIC3.31□□□□□ -1.88
MSX2P35548 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
MSX2P35548 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX2P35548 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
MSX2P35548 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX2P35548 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
MSX2P35548 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.3□□□□□ -1.88
MSX2P35548 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 MAPK10-322ENST00000641485 4530 ntBASIC3.3□□□□□ -1.88
MSX2P35548 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 RNU6-774P-201ENST00000363238 107 ntBASIC3.3□□□□□ -1.88
MSX2P35548 SNORD56.3-201ENST00000363507 71 ntBASIC3.3□□□□□ -1.88
MSX2P35548 Y_RNA.199-201ENST00000364014 102 ntBASIC3.3□□□□□ -1.88
MSX2P35548 SNORD116-20-201ENST00000384529 92 ntBASIC3.3□□□□□ -1.88
MSX2P35548 RNA5SP171-201ENST00000391071 115 ntBASIC3.3□□□□□ -1.88
MSX2P35548 SNORD12B-201ENST00000410433 91 ntBASIC3.3□□□□□ -1.88
MSX2P35548 AL591419.1-201ENST00000427423 339 ntBASIC3.3□□□□□ -1.88
MSX2P35548 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.3□□□□□ -1.88
MSX2P35548 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.3□□□□□ -1.88
MSX2P35548 AC125238.1-201ENST00000448842 249 ntBASIC3.3□□□□□ -1.88
MSX2P35548 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
MSX2P35548 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.3□□□□□ -1.88
MSX2P35548 RNU7-120P-201ENST00000459334 63 ntBASIC3.3□□□□□ -1.88
MSX2P35548 RN7SL542P-201ENST00000467147 294 ntBASIC3.3□□□□□ -1.88
MSX2P35548 RN7SL594P-201ENST00000470590 287 ntBASIC3.3□□□□□ -1.88
MSX2P35548 RNU6-1212P-201ENST00000517023 104 ntBASIC3.3□□□□□ -1.88
MSX2P35548 RNU6-711P-201ENST00000517255 106 ntBASIC3.3□□□□□ -1.88
MSX2P35548 MIR3158-1-201ENST00000583596 81 ntBASIC3.3□□□□□ -1.88
MSX2P35548 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.3□□□□□ -1.88
MSX2P35548 MIR6875-201ENST00000617506 72 ntBASIC3.3□□□□□ -1.88
MSX2P35548 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
MSX2P35548 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
MSX2P35548 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
MSX2P35548 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSX2P35548 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.3□□□□□ -1.88
MSX2P35548 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSX2P35548 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSX2P35548 GABRG2-229ENST00000641017 3628 ntBASIC3.29□□□□□ -1.88
MSX2P35548 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
MSX2P35548 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.29□□□□□ -1.88
MSX2P35548 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
MSX2P35548 MIR148B-201ENST00000362252 99 ntBASIC3.29□□□□□ -1.88
MSX2P35548 Y_RNA.44-201ENST00000362676 108 ntBASIC3.29□□□□□ -1.88
MSX2P35548 RNU6-545P-201ENST00000362681 104 ntBASIC3.29□□□□□ -1.88
MSX2P35548 MIR10B-201ENST00000385011 110 ntBASIC3.29□□□□□ -1.88
MSX2P35548 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
MSX2P35548 RNA5SP252-201ENST00000391131 119 ntBASIC3.29□□□□□ -1.88
MSX2P35548 UBA52P6-201ENST00000399822 382 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms