Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNU6-1176P-201ENST00000390955 107 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 MTCYBP2-201ENST00000407745 171 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 RNU6-757P-201ENST00000410334 100 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 RPL21P90-201ENST00000415692 466 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL591043.1-201ENST00000432461 424 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL049829.1-201ENST00000465411 156 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 HMGN2P9-201ENST00000476875 229 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 MTND3P5-201ENST00000512798 333 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 RNA5SP337-201ENST00000517007 109 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL078603.1-201ENST00000603824 313 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AC104073.3-201ENST00000610942 955 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
HLA-DMBP28068 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AP000484.1-201ENST00000620067 1252 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AC009033.1-201ENST00000624279 431 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.75□□□□□ -2.29
HLA-DMBP28068 U4.7-201ENST00000638126 106 ntBASIC0.75□□□□□ -2.29
HLA-DMBP28068 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 Y_RNA.116-201ENST00000363292 103 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 RNU1-124P-201ENST00000363861 145 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 RNU6-1019P-201ENST00000364424 107 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 RNU4-38P-201ENST00000364472 129 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 RNU5E-7P-201ENST00000365290 117 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 MTCO3P41-201ENST00000414801 328 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC114491.1-201ENST00000416095 246 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 NDUFA5P4-201ENST00000436704 385 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 SNRPEP8-201ENST00000442866 260 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 CENPUP1-201ENST00000526649 1202 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 AL512310.8-201ENST00000550183 120 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 MIR3136-201ENST00000583498 78 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC008752.3-201ENST00000588113 712 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 AC069431.2-201ENST00000604149 1099 ntBASIC0.74□□□□□ -2.29
HLA-DMBP28068 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.74□□□□□ -2.29
HLA-DMBP28068 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.73□□□□□ -2.29
HLA-DMBP28068 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
HLA-DMBP28068 Y_RNA.122-201ENST00000363331 96 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 RNU4-1-201ENST00000363925 141 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 MIR222-201ENST00000384992 110 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 MIR518E-201ENST00000385252 88 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 SNORA12.2-201ENST00000391040 156 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 SNORD115.1-201ENST00000391109 76 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 RPL21P1-201ENST00000399532 476 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 MTCO1P21-201ENST00000416634 589 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 MTND1P18-201ENST00000448191 573 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 RNU5A-4P-201ENST00000516588 111 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 AP002453.2-201ENST00000533503 320 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 BNIP3P40-201ENST00000596017 556 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 MZT1P2-201ENST00000604387 248 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 MIR8065-201ENST00000620577 100 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 AC027335.2-201ENST00000624030 375 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 AL138960.2-201ENST00000625145 535 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 SNORD98-201ENST00000636377 67 ntBASIC0.73□□□□□ -2.29
HLA-DMBP28068 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.73□□□□□ -2.29
HLA-DMBP28068 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU6-527P-201ENST00000363425 104 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU6-105P-201ENST00000363909 104 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 Y_RNA.302-201ENST00000364997 102 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 SNORA18.2-201ENST00000383865 132 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 SNORA32.2-201ENST00000384049 122 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 SNORA29-201ENST00000384183 140 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 SNORA24.1-201ENST00000384401 135 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU2-3P-201ENST00000410144 191 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU2-7P-201ENST00000410794 178 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 PGBD4P5-201ENST00000445958 426 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 ATP5J2P3-201ENST00000451550 258 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 snoU13.30-201ENST00000458951 104 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 MTCO2P29-201ENST00000465212 189 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC114982.1-201ENST00000469402 321 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU6-113P-201ENST00000516653 101 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 CBX3P8-201ENST00000532412 525 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms