Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A1P12109 AC099654.7-201ENST00000635788 2127 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A1P12109 AC007496.3-201ENST00000624987 3443 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL6A1P12109 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A1P12109 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A1P12109 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A1P12109 U3.6-201ENST00000363622 211 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 RNU6-166P-201ENST00000384371 107 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 MIR190B-201ENST00000401119 79 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 RNU2-68P-201ENST00000410878 191 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 AC099548.1-201ENST00000421443 426 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 AC124916.1-201ENST00000444020 547 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 AC079354.2-201ENST00000453523 154 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 RPS26P21-201ENST00000475397 348 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 RNA5SP165-201ENST00000517142 115 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.71□□□□□ -1.82
COL6A1P12109 AL365434.2-201ENST00000607979 234 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.71□□□□□ -1.82
COL6A1P12109 AP000560.1-201ENST00000624150 1937 ntBASIC3.71□□□□□ -1.82
COL6A1P12109 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A1P12109 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
COL6A1P12109 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A1P12109 RNU6-428P-201ENST00000362942 107 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 RNA5SP197-201ENST00000363357 119 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 RNU2-25P-201ENST00000411041 191 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AL591043.1-201ENST00000432461 424 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.7□□□□□ -1.82
COL6A1P12109 AL513124.1-201ENST00000450410 614 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 RN7SL863P-201ENST00000462370 296 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC067942.3-201ENST00000512025 362 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 RNU7-175P-201ENST00000515915 61 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 Y_RNA.706-201ENST00000516933 99 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 MIR2355-201ENST00000517199 87 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC093331.1-201ENST00000521474 169 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A1P12109 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A1P12109 AC104581.2-201ENST00000572227 430 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC012433.1-201ENST00000588916 398 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC005046.1-201ENST00000608515 625 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 AC098479.1-201ENST00000609225 154 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 MIR6715A-201ENST00000615929 79 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A1P12109 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A1P12109 MAPK10-322ENST00000641485 4530 ntBASIC3.7□□□□□ -1.82
COL6A1P12109 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A1P12109 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A1P12109 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A1P12109 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
COL6A1P12109 RNU6-200P-201ENST00000364743 107 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 Y_RNA.416-201ENST00000384014 113 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 RNU6-708P-201ENST00000384217 107 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 RNU6-140P-201ENST00000384566 108 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 SNORA12.2-201ENST00000391040 156 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 RNU4-61P-201ENST00000411243 107 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A1P12109 RPL21P38-201ENST00000418090 167 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A1P12109 AC002075.2-201ENST00000425207 252 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC098614.2-201ENST00000426040 255 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC004383.1-201ENST00000438135 289 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 HIGD1AP2-201ENST00000446367 280 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC139453.3-201ENST00000493276 369 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 HMGB3P17-201ENST00000504195 649 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A1P12109 RN7SKP40-201ENST00000517211 242 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A1P12109 AC026333.2-201ENST00000542164 106 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AL442163.3-201ENST00000554110 156 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.69□□□□□ -1.82
COL6A1P12109 AL162713.1-201ENST00000604480 262 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC099506.2-201ENST00000623074 221 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 SCARNA4-202ENST00000625402 129 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 AC110079.1-202ENST00000635213 138 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.69□□□□□ -1.82
COL6A1P12109 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.69□□□□□ -1.82
COL6A1P12109 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A1P12109 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
COL6A1P12109 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A1P12109 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A1P12109 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A1P12109 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A1P12109 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
COL6A1P12109 Y_RNA.20-201ENST00000362479 113 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 Y_RNA.123-201ENST00000363338 102 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 Y_RNA.358-201ENST00000365491 99 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 Y_RNA.439-201ENST00000384119 94 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 RNU6-130P-201ENST00000411112 103 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 SDAD1P3-201ENST00000427380 333 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 MTCO3P29-201ENST00000432119 779 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 RNU7-87P-201ENST00000459343 62 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 RNU7-23P-201ENST00000459465 62 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 RPS29P27-201ENST00000463711 170 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 SNORA31.6-201ENST00000516241 130 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 AP006245.1-201ENST00000522549 120 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 AC093023.1-201ENST00000547375 507 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.68□□□□□ -1.82
COL6A1P12109 AC073410.2-201ENST00000603240 332 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms