Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RPL21P1-201ENST00000399532 476 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 RNU6-248P-201ENST00000410720 107 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN9O95484 SNORD56-201ENST00000413522 71 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 UBE2V1P4-201ENST00000425374 344 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 PRPS1P1-201ENST00000445305 876 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AL360221.1-201ENST00000445989 335 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 MTND1P18-201ENST00000448191 573 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AC022364.2-201ENST00000457963 554 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.63□□□□□ -2.15
CLDN9O95484 AL163540.1-201ENST00000485382 386 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AC104564.1-201ENST00000493028 407 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CLDN9O95484 MIR449C-201ENST00000516047 92 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN9O95484 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDN9O95484 TRAV32-201ENST00000553993 340 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AP000654.2-201ENST00000605633 586 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 U1.36-201ENST00000620684 176 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 AC022418.1-201ENST00000624118 445 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 SNORD98-201ENST00000636377 67 ntBASIC1.63□□□□□ -2.15
CLDN9O95484 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
CLDN9O95484 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 RNU6-336P-201ENST00000364891 107 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 RNU6-234P-201ENST00000365229 104 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 RNU6-393P-201ENST00000384475 107 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 RNU6-692P-201ENST00000384496 107 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.62□□□□□ -2.15
CLDN9O95484 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.62□□□□□ -2.15
CLDN9O95484 AC007677.1-201ENST00000445757 515 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 MTCO2P6-201ENST00000463134 685 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AC145146.1-201ENST00000496370 254 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 MTND3P5-201ENST00000512798 333 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AC109479.2-201ENST00000517842 174 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.62□□□□□ -2.15
CLDN9O95484 AP005435.4-201ENST00000529514 284 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AP002963.1-201ENST00000530590 184 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.62□□□□□ -2.15
CLDN9O95484 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.62□□□□□ -2.15
CLDN9O95484 MIR4713-201ENST00000582691 75 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 AC018889.1-201ENST00000605372 397 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CLDN9O95484 AC008993.2-201ENST00000631744 806 ntBASIC1.62□□□□□ -2.15
CLDN9O95484 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.61□□□□□ -2.15
CLDN9O95484 MIR378A-201ENST00000362177 66 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU4-15P-201ENST00000362613 141 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-181P-201ENST00000363225 107 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-23P-201ENST00000363283 107 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 U3.4-201ENST00000363352 213 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU4-91P-201ENST00000364778 135 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-43P-201ENST00000384302 107 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-434P-201ENST00000384376 107 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 SNORD70.1-201ENST00000391007 85 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU2-9P-201ENST00000410194 145 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-321P-201ENST00000410912 106 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 POLHP1-201ENST00000411806 470 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.61□□□□□ -2.15
CLDN9O95484 EIF4EP2-201ENST00000422816 654 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.61□□□□□ -2.15
CLDN9O95484 HSPE1P21-201ENST00000438283 308 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.61□□□□□ -2.15
CLDN9O95484 AC244505.5-201ENST00000443639 207 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AL031274.1-201ENST00000450334 232 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 MTND3P7-201ENST00000474435 343 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AC010486.2-201ENST00000505572 483 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU2-69P-201ENST00000516061 100 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-445P-201ENST00000516949 107 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-250P-201ENST00000516958 103 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.61□□□□□ -2.15
CLDN9O95484 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.61□□□□□ -2.15
CLDN9O95484 AC022254.1-201ENST00000567857 235 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.61□□□□□ -2.15
CLDN9O95484 BNIP3P16-201ENST00000589779 534 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 Z94722.1-201ENST00000604328 474 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 uc_338.11-201ENST00000619132 160 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 AC130454.1-201ENST00000622948 401 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.61□□□□□ -2.15
CLDN9O95484 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
CLDN9O95484 RNU6-160P-201ENST00000384591 107 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 SNORA16.2-201ENST00000390991 127 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AL357139.1-201ENST00000407792 426 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN9O95484 PIGFP2-201ENST00000421400 651 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC108667.1-201ENST00000428618 249 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.6□□□□□ -2.15
CLDN9O95484 MTND1P27-201ENST00000451117 902 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN9O95484 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.6□□□□□ -2.15
CLDN9O95484 LRRC34P2-201ENST00000514850 553 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 Y_RNA.717-201ENST00000517106 92 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 RNA5SP490-201ENST00000517141 136 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN9O95484 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms