Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 MIR520F-201ENST00000384824 87 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AC073261.1-201ENST00000429409 121 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 IL7-206ENST00000520269 456 ntTSL 3 BASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AL353778.1-201ENST00000603149 408 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AL357312.1-201ENST00000603879 298 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AL133445.2-201ENST00000611191 527 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AP005212.4-201ENST00000614206 710 ntBASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-0.35□□□□□ -2.47
CCDC88BA6NC98 LINC02555-201ENST00000563933 1951 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNU6-543P-201ENST00000362576 108 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNU4-48P-201ENST00000365559 182 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNU1-39P-201ENST00000383897 165 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 MTND1P28-201ENST00000435623 950 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AC091874.1-201ENST00000511402 339 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNA5SP67-201ENST00000516422 131 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 RNU6-703P-201ENST00000516946 107 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AC069113.3-201ENST00000521019 150 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 AC022523.2-201ENST00000561045 150 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 MIR4764-201ENST00000580680 88 ntBASIC-0.36□□□□□ -2.47
CCDC88BA6NC98 CASC19-280ENST00000642102 1351 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 DLEU2_6.3-201ENST00000340052 136 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC092268.1-201ENST00000342691 405 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC073910.1-201ENST00000445047 438 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 OR6C5P-201ENST00000452388 923 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 RNU6-491P-201ENST00000516099 110 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC137800.2-201ENST00000574375 120 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC104408.1-201ENST00000605241 170 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 DLEU2_6.2-201ENST00000620994 136 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 AC011155.2-201ENST00000623202 216 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 SNORD3E-202ENST00000627253 216 ntBASIC-0.37□□□□□ -2.47
CCDC88BA6NC98 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 RNU5E-8P-201ENST00000363502 116 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 RNU6-1067P-201ENST00000384752 107 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 MIR644A-201ENST00000385262 94 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 RPL39P38-201ENST00000467018 153 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AL049830.1-201ENST00000468034 425 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 AC004853.1-201ENST00000604902 698 ntBASIC-0.38□□□□□ -2.47
CCDC88BA6NC98 RNU6-1339P-201ENST00000363574 91 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 SNORD49B-201ENST00000365172 72 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 MIR518A1-201ENST00000385068 85 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 MIR140-201ENST00000385282 100 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 RNU6-1176P-201ENST00000390955 107 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 RAP1BP3-201ENST00000407180 549 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 UBE2V1P15-201ENST00000407776 448 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 TAF13P2-201ENST00000416876 286 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 AL451054.2-201ENST00000420896 202 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 AC007435.1-201ENST00000421086 415 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 RNU7-21P-201ENST00000459430 62 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 MIR4723-201ENST00000585070 81 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 AL355598.1-201ENST00000604169 202 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 SNRPGP20-201ENST00000604477 205 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 MIR3976-201ENST00000606807 139 ntBASIC-0.39□□□□□ -2.47
CCDC88BA6NC98 SNORD114-5-201ENST00000362928 70 ntBASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 RNU6-1019P-201ENST00000364424 107 ntBASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 RNU6-898P-201ENST00000365627 104 ntBASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.4□□□□□ -2.47
CCDC88BA6NC98 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 RNU6-46P-201ENST00000383860 107 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 MIR186-201ENST00000384988 86 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 SNORA16.2-201ENST00000390991 127 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 RNU6-233P-201ENST00000410845 141 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 DNAJA1P2-201ENST00000421360 1197 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 AC011374.2-201ENST00000607135 526 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 AC063943.3-201ENST00000615562 356 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 AC010133.1-201ENST00000615809 842 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 AC116165.2-201ENST00000616705 206 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 MIR1295B-201ENST00000636144 60 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 MIR4275-201ENST00000636486 87 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 U6.99-201ENST00000637524 83 ntBASIC-0.41□□□□□ -2.47
CCDC88BA6NC98 SNORA42.1-201ENST00000363515 137 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 RNU6-793P-201ENST00000384233 104 ntBASIC-0.41□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms