Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS54Q9P1Q0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 U3.13-201ENST00000364804 214 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 Y_RNA.399-201ENST00000383955 105 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 Y_RNA.559-201ENST00000384686 107 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 MIR583-201ENST00000384846 75 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 RNU6-293P-201ENST00000411259 106 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 EDDM3CP-201ENST00000415977 425 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 DLGAP5P1-201ENST00000430307 464 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 RPL7P54-201ENST00000438336 674 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 FDX1P2-201ENST00000450769 375 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL353752.1-201ENST00000454946 260 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL122001.1-201ENST00000457027 370 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 RNU7-167P-201ENST00000459160 62 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 snoU13.26-201ENST00000459452 105 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC018868.1-201ENST00000491307 315 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 MTND2P33-201ENST00000506452 1031 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 MTND3P5-201ENST00000512798 333 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 SNORA40.12-201ENST00000516329 111 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AP001893.2-201ENST00000526949 202 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 IMMP1LP2-201ENST00000552954 492 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC024909.2-201ENST00000553035 286 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 OR11H5P-201ENST00000554039 926 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 MIR4298-201ENST00000584380 73 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC078899.2-201ENST00000595282 212 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AC080013.6-201ENST00000606185 215 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 uc_338.34-201ENST00000617467 174 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL159153.1-201ENST00000619688 317 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 AL162373.1-201ENST00000620433 407 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 OR5AK4P-201ENST00000635912 903 ntBASIC2.08□□□□□ -2.08
VPS54Q9P1Q0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 snoU2_19.1-201ENST00000362361 80 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNU6-105P-201ENST00000363909 104 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNU4-75P-201ENST00000364621 146 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNU6-336P-201ENST00000364891 107 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNU6-1274P-201ENST00000384557 107 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AL606923.1-201ENST00000406616 190 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 MIR1294-201ENST00000408503 142 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AL121601.2-201ENST00000438019 707 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC243964.1-201ENST00000441814 261 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AL031274.1-201ENST00000450334 232 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC087884.1-201ENST00000469738 328 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNA5SP182-201ENST00000516064 82 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 RNU6-1038P-201ENST00000516516 104 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC104383.1-201ENST00000530297 370 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AP003034.1-201ENST00000534621 422 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC233702.2-202ENST00000562547 291 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 MIR4419B-201ENST00000577260 68 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 MIR4424-201ENST00000585257 86 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AC116312.1-201ENST00000606841 314 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 U2.17-201ENST00000611454 95 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 HULC.1-201ENST00000612720 240 ntBASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS54Q9P1Q0 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 KPNA2P1-201ENST00000458289 1591 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 RNU6-1210P-201ENST00000363775 107 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 Y_RNA.194-201ENST00000363985 102 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 CBX3P9-201ENST00000402326 552 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AL121890.1-201ENST00000435457 205 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 RNA5SP233-201ENST00000459153 113 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 snoU13.14-201ENST00000459372 104 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 SRRM1P2-201ENST00000464531 1192 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 SNRPGP7-201ENST00000469016 106 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 RN7SL274P-201ENST00000492268 272 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC107401.1-201ENST00000503426 685 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 YWHAEP4-201ENST00000505390 198 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC107393.1-201ENST00000512403 346 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 SNORA31.25-201ENST00000517242 134 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC107953.1-201ENST00000522216 297 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC103996.1-201ENST00000555468 102 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC107304.1-201ENST00000604229 296 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 ELOCP5-201ENST00000604924 333 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AP001330.5-201ENST00000607176 411 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 Z82243.1-201ENST00000609432 473 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC104073.3-201ENST00000610942 955 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC124864.2-201ENST00000624736 186 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 AC002543.1-201ENST00000299783 1954 ntBASIC2.06□□□□□ -2.08
VPS54Q9P1Q0 RNU6-827P-201ENST00000365553 106 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms