Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RPL23AP67-201ENST00000465341 474 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RN7SL542P-201ENST00000467147 294 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC087190.1-201ENST00000484462 480 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC107032.1-201ENST00000485945 480 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC132942.1-201ENST00000486753 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC093591.1-201ENST00000491435 481 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RPL21P16-201ENST00000495531 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RN7SKP18-201ENST00000516005 275 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC107934.2-201ENST00000518653 310 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 NDUFB9P3-201ENST00000521269 501 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC091152.3-201ENST00000604227 325 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 MIR7851-201ENST00000610611 160 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AL356274.2-201ENST00000624379 3752 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.214-201ENST00000364201 112 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 SNORA73.2-201ENST00000364946 201 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.476-201ENST00000384347 108 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RNU6-750P-201ENST00000390946 107 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 SNORA26.3-201ENST00000391119 136 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RNU1-139P-201ENST00000391307 165 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RN7SKP111-201ENST00000410349 271 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC023141.4-201ENST00000412031 328 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RPS26P42-201ENST00000413485 326 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 USP9YP16-201ENST00000430287 407 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC244670.1-201ENST00000436879 112 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 DYNLT3P2-201ENST00000442517 295 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 USP9YP23-201ENST00000455085 407 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC087477.1-201ENST00000465747 340 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RPS4XP22-201ENST00000480755 780 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC110768.1-201ENST00000509222 400 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RNA5SP385-201ENST00000515947 110 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 MIR2276-201ENST00000516886 89 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 SNORA31.21-201ENST00000517180 77 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RNU1-45P-201ENST00000517191 141 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 RNU6-794P-201ENST00000517261 64 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC023632.4-201ENST00000517783 191 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 MRPS36P4-201ENST00000534436 298 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC025281.1-201ENST00000567026 265 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC034105.4-201ENST00000568304 277 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 MIR3136-201ENST00000583498 78 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC010928.2-201ENST00000588017 287 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 MIR6798-201ENST00000612887 67 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC107871.2-201ENST00000612894 502 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC130454.1-201ENST00000622948 401 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC092435.3-201ENST00000565538 3654 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 ZNF72P-201ENST00000425869 1908 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 AC017071.1-201ENST00000564407 2204 ntBASIC3.07□□□□□ -1.92
VSX1Q9NZR4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.07□□□□□ -1.92
VSX1Q9NZR4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU1-105P-201ENST00000363470 161 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU6-1285P-201ENST00000363480 105 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 SNORD115-8-201ENST00000363856 82 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU4-56P-201ENST00000364700 142 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.288-201ENST00000364854 92 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 SNORD115-38-201ENST00000365037 82 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU1-140P-201ENST00000365040 165 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.504-201ENST00000384481 104 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 MIR1302-6-201ENST00000408466 90 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AL358075.3-201ENST00000426289 226 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 BX679664.1-201ENST00000434429 253 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RBBP8P1-201ENST00000449447 1844 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.668-201ENST00000516233 93 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 SNORD59.2-201ENST00000516873 68 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNA5SP54-201ENST00000516951 92 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 RNU6-711P-201ENST00000517255 106 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 MIR4506-201ENST00000584693 77 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AC024220.1-201ENST00000603675 484 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.772-201ENST00000606692 102 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AC062037.2-201ENST00000610137 73 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 AC039056.2-201ENST00000622261 511 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 SNORA43.4-201ENST00000629559 138 ntBASIC3.06□□□□□ -1.92
VSX1Q9NZR4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VSX1Q9NZR4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC010889.1-201ENST00000566193 2666 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms