Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AC119751.4-201ENST00000507498 357 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AC087854.1-201ENST00000519706 414 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AL391001.1-201ENST00000602747 715 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AL592221.1-201ENST00000605266 382 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AC105129.3-201ENST00000605455 485 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 U6.42-201ENST00000618440 107 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.65□□□□□ -2.31
SCN3AQ9NY46 RNU6-716P-201ENST00000365621 103 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL133475.1-201ENST00000404414 305 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 CBX3P6-201ENST00000430257 527 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 MTND1P30-201ENST00000441241 901 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RPL26P26-201ENST00000480251 434 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC104806.1-201ENST00000508720 308 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 MIR449C-201ENST00000516047 92 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 Y_RNA.687-201ENST00000516558 91 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU6-914P-201ENST00000516749 109 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC092325.1-201ENST00000566449 554 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC072039.2-201ENST00000608883 439 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU6-462P-201ENST00000362659 105 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU4-56P-201ENST00000364700 142 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU1-36P-201ENST00000365130 165 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 MIR618-201ENST00000385287 98 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 EIF1P1-201ENST00000421436 341 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL590556.1-201ENST00000423231 483 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 MTND4P20-201ENST00000424125 869 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU6-953P-201ENST00000459154 107 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC130509.1-201ENST00000464158 433 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RPS27P22-201ENST00000478056 241 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RNU6-229P-201ENST00000516614 102 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AP003122.4-201ENST00000530980 758 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 RN7SL793P-201ENST00000583259 296 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL512605.2-201ENST00000592972 256 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC008751.2-201ENST00000597885 980 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AP003465.2-201ENST00000602571 373 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC018926.1-201ENST00000616335 435 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL590240.4-201ENST00000616908 390 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.64□□□□□ -2.31
SCN3AQ9NY46 FRG1KP-201ENST00000623592 341 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AC092656.1-203ENST00000624134 423 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 MIR1248-201ENST00000629190 106 ntBASIC0.64□□□□□ -2.31
SCN3AQ9NY46 AL391516.1-201ENST00000554380 2449 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 RNU6-1274P-201ENST00000384557 107 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 MIR19B1-201ENST00000384829 87 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AL591212.2-201ENST00000433923 257 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 DYNLT3P2-201ENST00000442517 295 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 RNU7-40P-201ENST00000516397 64 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 RNU6-677P-201ENST00000516914 101 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AL512310.8-201ENST00000550183 120 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 AC007363.1-201ENST00000604736 620 ntBASIC0.63□□□□□ -2.31
SCN3AQ9NY46 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
SCN3AQ9NY46 Y_RNA.33-201ENST00000362591 102 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 snoU109.2-201ENST00000459316 135 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 HSPE1P23-201ENST00000509838 286 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC112206.3-201ENST00000514578 389 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNA5SP437-201ENST00000517249 129 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 ADI1P3-201ENST00000549509 470 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 CYP3A52P-201ENST00000563326 91 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC109446.1-201ENST00000566172 220 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 MIR544B-201ENST00000582372 78 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC012409.4-201ENST00000612923 249 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNU6-37P-201ENST00000362692 107 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNU6-11P-201ENST00000364234 107 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNU6-1187P-201ENST00000364771 110 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNU6-43P-201ENST00000384302 107 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RPS3AP36-201ENST00000398190 775 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RN7SKP61-201ENST00000410642 295 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 RNU6-1054P-201ENST00000411293 104 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC104629.1-201ENST00000494226 508 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AC079140.3-201ENST00000511111 550 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 AL442163.3-201ENST00000554110 156 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 HMGB1P33-201ENST00000563485 527 ntBASIC0.62□□□□□ -2.31
SCN3AQ9NY46 Y_RNA.110-201ENST00000363220 99 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 RNU6-511P-201ENST00000363496 107 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 RNU6-939P-201ENST00000384634 107 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 RNU6-1105P-201ENST00000384774 107 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms