Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TPTE2P5-203ENST00000458118 728 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC009646.1-201ENST00000510455 318 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 SNORA14.1-201ENST00000516113 141 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 Y_RNA.693-201ENST00000516641 110 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC034114.1-201ENST00000520293 285 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 MIR4524B-201ENST00000581569 115 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 MIR5007-201ENST00000583098 95 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AL096840.1-201ENST00000603287 93 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 ELOCP5-201ENST00000604924 333 ntBASIC2.05□□□□□ -2.08
DDX28Q9NUL7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
DDX28Q9NUL7 U3.13-201ENST00000364804 214 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU6-827P-201ENST00000365553 106 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU6-38P-201ENST00000384085 107 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 Y_RNA.436-201ENST00000384097 102 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 MTCO3P41-201ENST00000414801 328 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 Z98742.3-201ENST00000418637 326 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU6-333P-201ENST00000459117 107 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC087884.1-201ENST00000469738 328 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RN7SL636P-201ENST00000497504 294 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC022447.4-201ENST00000504053 364 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AK3P2-201ENST00000507976 429 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU5F-2P-201ENST00000516066 82 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU6-189P-201ENST00000516120 101 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU6-835P-201ENST00000516974 104 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 RNU2-19P-201ENST00000517288 84 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 CENPUP1-201ENST00000526649 1202 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC021269.2-201ENST00000532318 330 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 NDUFA5P6-201ENST00000542110 379 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.04□□□□□ -2.08
DDX28Q9NUL7 VN1R80P-201ENST00000597126 338 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC107304.1-201ENST00000604229 296 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AL356157.2-201ENST00000605122 111 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC103705.1-201ENST00000619013 241 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AL160394.1-201ENST00000624765 724 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 AC241585.2-209ENST00000638217 143 ntBASIC2.04□□□□□ -2.08
DDX28Q9NUL7 snoU2_19.1-201ENST00000362361 80 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNU6-1141P-201ENST00000364520 107 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNU4-66P-201ENST00000365199 138 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNU6-546P-201ENST00000383991 107 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNU6-692P-201ENST00000384496 107 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 Y_RNA.517-201ENST00000384551 106 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 POLHP1-201ENST00000411806 470 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL356320.1-201ENST00000429616 163 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 DLGAP5P1-201ENST00000430307 464 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNU7-138P-201ENST00000459479 64 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 SNORA4.4-201ENST00000515921 135 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 RNA5SP137-201ENST00000516833 135 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL512360.1-201ENST00000555346 234 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC103996.1-201ENST00000555468 102 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC007229.1-201ENST00000590455 412 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC002984.1-201ENST00000591692 448 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL158827.2-201ENST00000602494 330 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AC009314.1-201ENST00000603871 304 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
DDX28Q9NUL7 AL691447.3-201ENST00000635020 330 ntBASIC2.03□□□□□ -2.08
DDX28Q9NUL7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU6-623P-201ENST00000363143 105 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU4-40P-201ENST00000364351 143 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU6-43P-201ENST00000384302 107 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU6-648P-201ENST00000410190 107 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU2-32P-201ENST00000411193 191 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 ARL5AP1-201ENST00000418991 388 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RPS15AP10-201ENST00000432472 382 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RPS15AP28-201ENST00000435088 386 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 snoU13.15-201ENST00000459407 104 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC019235.1-201ENST00000503847 207 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU1-40P-201ENST00000516816 164 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 RNU1-97P-201ENST00000516872 164 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AP000763.2-201ENST00000540641 163 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC018630.3-201ENST00000542637 96 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC245505.1-201ENST00000556398 224 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 ANP32BP3-201ENST00000559213 706 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 MIR4648-201ENST00000580107 72 ntBASIC2.02□□□□□ -2.09
DDX28Q9NUL7 AC018889.1-201ENST00000605372 397 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms