Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPL21P39-201ENST00000463605 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC087190.1-201ENST00000484462 480 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RPL36AP48-201ENST00000485521 314 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC107032.1-201ENST00000485945 480 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC132942.1-201ENST00000486753 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC093591.1-201ENST00000491435 481 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RPL21P16-201ENST00000495531 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RNU2-27P-201ENST00000516185 142 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 MIR3922-201ENST00000585192 84 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 U3.45-201ENST00000607547 219 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC107294.3-201ENST00000609211 526 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 SNORD98-201ENST00000636377 67 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 GABRG2-229ENST00000641017 3628 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC091564.4-201ENST00000533934 2194 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.47-201ENST00000362697 108 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 RNU5F-3P-201ENST00000363767 117 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.319-201ENST00000365138 92 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 RPS26P42-201ENST00000413485 326 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 DBIP2-201ENST00000419076 262 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AL358232.1-201ENST00000448030 501 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 RBMY2UP-201ENST00000453474 324 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 snoU13.14-201ENST00000459372 104 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC090525.1-201ENST00000479116 478 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 RNU6-1114P-201ENST00000516022 107 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC007458.1-201ENST00000542812 373 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC069200.1-201ENST00000609511 323 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 UCA1.1-201ENST00000620952 75 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AC110079.1-202ENST00000635213 138 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 AL109809.4-201ENST00000603520 2185 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 PWAR6-201ENST00000552334 4618 ntBASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
TRIM39Q9HCM9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.210-201ENST00000364161 110 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 RNU6-1083P-201ENST00000384022 107 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 SNORA36A-201ENST00000384221 132 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.574-201ENST00000384766 95 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AC112771.1-201ENST00000463581 102 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 RN7SL594P-201ENST00000470590 287 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AC010655.3-201ENST00000478818 450 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 SNORA40.15-201ENST00000516884 107 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.713-201ENST00000517013 96 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AC022868.1-201ENST00000517767 391 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 HSPE1P20-201ENST00000538133 289 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 CYP4A27P-201ENST00000567218 190 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 MIR3923-201ENST00000579521 83 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 U4.6-201ENST00000621618 127 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 AL359854.1-201ENST00000614203 1594 ntBASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TRIM39Q9HCM9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 SNORA71.3-201ENST00000362582 128 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.276-201ENST00000364732 109 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNU6-283P-201ENST00000364788 107 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 CD24P4-201ENST00000382840 243 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.471-201ENST00000384312 102 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNY3P4-201ENST00000384428 101 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNU1-57P-201ENST00000384491 166 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNU6-713P-201ENST00000384761 107 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNA5SP171-201ENST00000391071 115 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 U3.26-201ENST00000391236 204 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNU1-139P-201ENST00000391307 165 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 AC006539.3-201ENST00000454258 129 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 HMGB1P35-201ENST00000503360 598 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 SLC25A15P5-201ENST00000508033 253 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 PHBP14-201ENST00000512887 367 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNU6-1143P-201ENST00000516125 104 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 RNA5SP54-201ENST00000516951 92 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 AC034114.1-201ENST00000520293 285 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 AP006245.1-201ENST00000522549 120 ntBASIC3.48□□□□□ -1.85
TRIM39Q9HCM9 AC079598.5-201ENST00000547460 117 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms