Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AL450472.1-202ENST00000637286 180 ntBASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PCIF1Q9H4Z3 AC010889.1-201ENST00000566193 2666 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-222P-201ENST00000362438 107 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU5B-2P-201ENST00000363036 113 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 SNORD46.1-201ENST00000364139 104 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-1222P-201ENST00000384615 107 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-19P-201ENST00000384718 107 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P75-201ENST00000396599 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P1-201ENST00000399532 476 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P28-201ENST00000401418 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL133475.1-201ENST00000404414 305 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 MIR1302-3-201ENST00000408128 138 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RN7SKP61-201ENST00000410642 295 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC114482.1-201ENST00000418010 247 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL590556.1-201ENST00000423231 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P40-201ENST00000428586 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL23AP62-201ENST00000463396 453 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P39-201ENST00000463605 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC087477.1-201ENST00000465747 340 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC107626.1-201ENST00000471084 183 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC087190.1-201ENST00000484462 480 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC107032.1-201ENST00000485945 480 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC132942.1-201ENST00000486753 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC093591.1-201ENST00000491435 481 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RPL21P16-201ENST00000495531 483 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC016632.1-201ENST00000503994 196 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 ANXA2P1-201ENST00000505539 926 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU1-143P-201ENST00000516296 146 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL161670.1-201ENST00000554348 137 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC004817.2-201ENST00000561794 651 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC090517.1-201ENST00000569307 266 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 MIR5571-201ENST00000577998 113 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL390123.1-201ENST00000603216 237 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 U1.23-201ENST00000610293 146 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 RNU1-68P-201ENST00000615382 146 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AL159153.1-201ENST00000619688 317 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 U1.39-201ENST00000621562 146 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 AC243829.7-201ENST00000633081 225 ntBASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
PCIF1Q9H4Z3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.152-201ENST00000363578 100 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 SNORD115-32-201ENST00000364079 82 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNU4-50P-201ENST00000364361 141 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 SNORA63.7-201ENST00000365579 123 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-17P-201ENST00000384245 107 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-18P-201ENST00000384527 107 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNU6-748P-201ENST00000384648 107 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 Y_RNA.551-201ENST00000384661 102 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 MIR32-201ENST00000384965 70 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 MIR23A-201ENST00000385245 73 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNA5SP390-201ENST00000410191 113 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RPL23AP22-201ENST00000437556 453 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AL731563.1-201ENST00000442202 214 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 GPM6BP3-201ENST00000442797 145 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC073910.1-201ENST00000445047 438 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RPL39P29-201ENST00000447779 157 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC006539.3-201ENST00000454258 129 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RNU7-170P-201ENST00000459303 61 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RN7SL863P-201ENST00000462370 296 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RN7SL504P-201ENST00000494496 287 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 SNORA64.4-201ENST00000516632 81 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 RN7SKP272-201ENST00000516988 232 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC016256.1-201ENST00000547971 354 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 MIR4474-201ENST00000579189 78 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC007179.3-201ENST00000604976 235 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 U4.1-201ENST00000620349 87 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 AC233263.6-201ENST00000631132 1963 ntBASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.47□□□□□ -1.85
PCIF1Q9H4Z3 SNORD6-201ENST00000365444 73 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-142P-201ENST00000384019 107 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC004383.1-201ENST00000438135 289 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AC006028.1-201ENST00000438379 402 ntBASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.46□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-397P-201ENST00000516226 104 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms