Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNRPGP18-201ENST00000553000 214 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 MIR3941-201ENST00000582572 103 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 AC005261.5-201ENST00000596280 355 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 AL008636.1-201ENST00000625038 1018 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 MIR7157-201ENST00000635801 60 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 ADAM3A-203ENST00000461344 2157 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC080100.1-201ENST00000624239 5356 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
USP28Q96RU2 Y_RNA.212-201ENST00000364177 102 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 RNU6-72P-201ENST00000384285 79 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AL023284.1-201ENST00000403956 276 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 HMGN2P10-201ENST00000448085 265 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC092001.1-201ENST00000453012 261 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.39□□□□□ -2.03
USP28Q96RU2 AC025033.1-201ENST00000463883 194 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
USP28Q96RU2 AC046134.1-201ENST00000514454 666 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC104576.1-201ENST00000524225 88 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 CYCSP27-201ENST00000527643 293 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC006199.1-201ENST00000548728 219 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AL121821.2-201ENST00000556081 394 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.39□□□□□ -2.03
USP28Q96RU2 AC021739.1-201ENST00000559631 174 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 MIR3199-1-201ENST00000582434 88 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 ELOCP5-201ENST00000604924 333 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC064836.2-201ENST00000609491 462 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AL138726.1-201ENST00000614873 333 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 Z69720.2-201ENST00000624755 279 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC112487.2-201ENST00000637950 304 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 AC131280.1-202ENST00000624067 4211 ntBASIC2.39□□□□□ -2.03
USP28Q96RU2 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.38□□□□□ -2.03
USP28Q96RU2 Y_RNA.166-201ENST00000363730 102 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 RNU1-91P-201ENST00000364746 163 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 RNA5SP37-201ENST00000365420 130 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
USP28Q96RU2 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
USP28Q96RU2 Y_RNA.529-201ENST00000384586 119 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 RNU6-510P-201ENST00000391239 108 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 HMGB3P2-201ENST00000411913 584 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AL139156.1-201ENST00000412785 841 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.38□□□□□ -2.03
USP28Q96RU2 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.38□□□□□ -2.03
USP28Q96RU2 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.38□□□□□ -2.03
USP28Q96RU2 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.38□□□□□ -2.03
USP28Q96RU2 RPL32P28-201ENST00000443577 397 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.38□□□□□ -2.03
USP28Q96RU2 AC128713.1-201ENST00000471495 306 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AC079804.2-201ENST00000490376 200 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AC092436.3-201ENST00000511788 257 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 RPL39P5-202ENST00000512505 151 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.38□□□□□ -2.03
USP28Q96RU2 Y_RNA.682-201ENST00000516457 100 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
USP28Q96RU2 COPS8P3-201ENST00000526024 482 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AP005639.2-201ENST00000527592 928 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.38□□□□□ -2.03
USP28Q96RU2 RAB11AP2-201ENST00000545905 639 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 LINC00933-203ENST00000559812 219 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AC009127.3-201ENST00000570531 403 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 AL121917.1-203ENST00000605534 577 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 MIR6134-201ENST00000617606 109 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 MIR3199-2-201ENST00000636243 86 ntBASIC2.38□□□□□ -2.03
USP28Q96RU2 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
USP28Q96RU2 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP28Q96RU2 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP28Q96RU2 AC010889.1-201ENST00000566193 2666 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
USP28Q96RU2 RNU6-428P-201ENST00000362942 107 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 RNU6-942P-201ENST00000363002 107 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 Y_RNA.135-201ENST00000363439 95 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 Y_RNA.142-201ENST00000363491 102 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 RN7SKP32-201ENST00000410167 303 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 RNU6-1328P-201ENST00000410938 106 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 SNORD56-201ENST00000413522 71 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 HMGB1P18-201ENST00000438801 619 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.37□□□□□ -2.03
USP28Q96RU2 RNU7-138P-201ENST00000459479 64 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 AC008526.1-201ENST00000509149 338 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.37□□□□□ -2.03
USP28Q96RU2 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.37□□□□□ -2.03
USP28Q96RU2 NACAP3-201ENST00000552100 481 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.37□□□□□ -2.03
USP28Q96RU2 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.37□□□□□ -2.03
USP28Q96RU2 RPS15AP11-201ENST00000594193 385 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 LARP7P1-201ENST00000605576 316 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.37□□□□□ -2.03
USP28Q96RU2 RMST_7.1-201ENST00000621935 268 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.37□□□□□ -2.03
USP28Q96RU2 TPTEP1-208ENST00000636884 213 ntBASIC2.37□□□□□ -2.03
USP28Q96RU2 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
USP28Q96RU2 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.37□□□□□ -2.03
USP28Q96RU2 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
USP28Q96RU2 CDC27P3-201ENST00000635418 1910 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
USP28Q96RU2 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
USP28Q96RU2 RNA5SP138-201ENST00000365098 114 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.36□□□□□ -2.03
USP28Q96RU2 SNORA51.11-201ENST00000384442 131 ntBASIC2.36□□□□□ -2.03
USP28Q96RU2 RNU6-1009P-201ENST00000390996 107 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms