Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 MED28P6-201ENST00000558776 231 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AC009127.3-201ENST00000570531 403 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 MIR4744-201ENST00000581563 82 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 AC091932.3-201ENST00000624223 323 ntBASIC4.61□□□□□ -1.67
TRERF1Q96PN7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
TRERF1Q96PN7 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNU6-173P-201ENST00000364215 104 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNU4-10P-201ENST00000364383 140 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNU6-763P-201ENST00000390865 106 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 U3.19-201ENST00000390893 196 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 PTMAP2-201ENST00000397627 327 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 MIR888-201ENST00000401186 77 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNA5SP89-201ENST00000410300 108 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 SNORD108-201ENST00000459332 71 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 AL121594.1-201ENST00000475906 575 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNA5SP76-201ENST00000516277 87 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNU6-155P-201ENST00000516347 100 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 SNORA43.2-201ENST00000516652 128 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 RNA5SP179-201ENST00000517284 121 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 AP004242.1-201ENST00000533701 349 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 SNORD84-203ENST00000584275 78 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 AC091167.4-201ENST00000605079 184 ntBASIC4.6□□□□□ -1.67
TRERF1Q96PN7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
TRERF1Q96PN7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
TRERF1Q96PN7 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
TRERF1Q96PN7 SNORA22-201ENST00000383907 134 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 RNU6-1144P-201ENST00000384247 104 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.59□□□□□ -1.67
TRERF1Q96PN7 TNPO1P3-201ENST00000436471 2662 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC092991.1-201ENST00000477176 376 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC025554.1-201ENST00000505641 188 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC021269.2-201ENST00000532318 330 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC004467.1-201ENST00000615678 330 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 AC039056.2-201ENST00000622261 511 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 CR392039.5-201ENST00000623201 510 ntBASIC4.59□□□□□ -1.67
TRERF1Q96PN7 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.59□□□□□ -1.68
TRERF1Q96PN7 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RNY1P11-201ENST00000363759 113 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RNU6-873P-201ENST00000363833 107 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 SNORD32A-201ENST00000364805 84 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 MIR30B-201ENST00000384850 88 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RNA5SP171-201ENST00000391071 115 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 Z98941.1-201ENST00000407764 100 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 Y_RNA.595-201ENST00000410403 105 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AC124916.1-201ENST00000444020 547 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AL500522.2-201ENST00000448562 343 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RNU6-625P-201ENST00000459412 107 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AC091153.1-201ENST00000466297 402 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RPS20P22-201ENST00000473700 357 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 RNU6-589P-201ENST00000516485 107 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 AC112200.1-201ENST00000625015 234 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 SCARNA4-202ENST00000625402 129 ntBASIC4.58□□□□□ -1.68
TRERF1Q96PN7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRERF1Q96PN7 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
TRERF1Q96PN7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
TRERF1Q96PN7 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
TRERF1Q96PN7 RNA5SP399-201ENST00000364003 117 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.57□□□□□ -1.68
TRERF1Q96PN7 SNORA36A-201ENST00000384221 132 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 Y_RNA.572-201ENST00000384757 98 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 MIR670-201ENST00000390142 98 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 MTHFD2P2-201ENST00000407725 247 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 RPL27AP8-201ENST00000424277 446 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC4.57□□□□□ -1.68
TRERF1Q96PN7 RN7SL323P-201ENST00000494712 295 ntBASIC4.57□□□□□ -1.68
TRERF1Q96PN7 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms