Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU6-858P-201ENST00000362436 107 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.29-201ENST00000362570 113 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU6-774P-201ENST00000363238 107 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU6-1317P-201ENST00000364582 104 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.458-201ENST00000384240 102 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU6-886P-201ENST00000384319 105 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 SNORA69.1-201ENST00000390904 137 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 MTCO2P33-201ENST00000402100 465 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 HLFP1-201ENST00000402375 499 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 ATP5A1P2-201ENST00000412323 255 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 SDAD1P3-201ENST00000427380 333 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AC092423.1-201ENST00000430165 186 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AL353705.1-201ENST00000433468 480 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 SNORD105B-201ENST00000458770 79 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 snoU13.22-201ENST00000459428 104 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AC110768.1-201ENST00000509222 400 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AC009163.5-201ENST00000575421 637 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AL391813.1-201ENST00000603098 260 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AL133393.1-201ENST00000603277 287 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 RNU1-30P-201ENST00000606575 163 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 UCA1.1-201ENST00000620952 75 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 AP000553.6-201ENST00000641242 118 ntBASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CLIP3Q96DZ5 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 RNU6-280P-201ENST00000364145 104 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 RNU6-746P-201ENST00000384112 109 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 SNORD116-20-201ENST00000384529 92 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 RNU6-748P-201ENST00000384648 107 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AL117339.3-201ENST00000418733 162 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AL358075.3-201ENST00000426289 226 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 CYCSP35-201ENST00000451978 304 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC013470.1-201ENST00000453438 462 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 RPS29P12-201ENST00000460178 152 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC074250.1-201ENST00000511117 192 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC067942.3-201ENST00000512025 362 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 MIR3910-1-201ENST00000580936 111 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC006557.5-201ENST00000603126 811 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 SRGNP1-201ENST00000603392 451 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC002064.3-201ENST00000623448 346 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 AC099654.7-201ENST00000635788 2127 ntBASIC3.49□□□□□ -1.85
CLIP3Q96DZ5 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RPL9P7-201ENST00000330965 580 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RNU1-76P-201ENST00000362903 159 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 Y_RNA.297-201ENST00000364950 91 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 SNORA70.4-201ENST00000365509 134 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RNU6-827P-201ENST00000365553 106 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 SNORD115-46-201ENST00000390982 71 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AL603910.2-201ENST00000407268 136 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RNA5SP494-201ENST00000410653 129 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AL139156.1-201ENST00000412785 841 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC007098.1-201ENST00000420122 367 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AL513043.1-201ENST00000439124 535 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC104332.1-201ENST00000440471 797 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC012308.1-201ENST00000451232 178 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AL441985.1-201ENST00000457727 251 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RNU6-1037P-201ENST00000459571 107 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RPL9P9-202ENST00000466501 579 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC107626.1-201ENST00000471084 183 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 MED28P2-201ENST00000475771 317 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC010469.2-201ENST00000496412 480 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 RNU5F-8P-201ENST00000515941 111 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 NDUFB9P3-201ENST00000521269 501 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 MIR3922-201ENST00000585192 84 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AL450472.1-202ENST00000637286 180 ntBASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CLIP3Q96DZ5 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CLIP3Q96DZ5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms