Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU7-4P-201ENST00000516961 62 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 SNORD116.3-201ENST00000517176 78 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MIR4286-201ENST00000580651 93 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MIR6867-201ENST00000610636 67 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.5-201ENST00000362334 102 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 snoU2_19.1-201ENST00000362361 80 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 RNU1-72P-201ENST00000362976 153 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 SNORA70.2-201ENST00000364506 135 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 SET-203ENST00000372688 801 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-474P-201ENST00000384243 107 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 MIR32-201ENST00000384965 70 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 MIR625-201ENST00000385047 85 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 MIR29B2-201ENST00000385055 81 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AL139247.1-201ENST00000422768 325 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC092423.1-201ENST00000430165 186 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 H2AFZP6-201ENST00000444403 394 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 snoU13.6-201ENST00000458785 104 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 RPL21P10-201ENST00000463521 490 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.661-201ENST00000516003 99 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC022695.1-201ENST00000522089 237 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 CYCSP30-201ENST00000546447 172 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC005520.5-201ENST00000613926 164 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC119674.1-207ENST00000641355 633 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 AC069528.2-201ENST00000624849 1991 ntBASIC2.79□□□□□ -1.96
CCDC28AQ8IWP9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNU4-15P-201ENST00000362613 141 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 XGY1-201ENST00000381172 446 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNU1-109P-201ENST00000383960 147 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-17P-201ENST00000384245 107 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-18P-201ENST00000384527 107 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 MIR190B-201ENST00000401119 79 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 MIR208B-201ENST00000401172 77 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL139095.1-201ENST00000404326 391 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP317-201ENST00000410176 116 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-1156P-201ENST00000410365 100 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP311-201ENST00000411290 116 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC018865.2-201ENST00000423631 129 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL117339.2-201ENST00000430475 180 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 MTCYBP6-201ENST00000441810 138 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL035666.1-201ENST00000446195 348 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AP000705.1-201ENST00000454567 350 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP315-201ENST00000516340 116 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP312-201ENST00000517068 116 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 MIR3117-201ENST00000584034 78 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL713866.2-201ENST00000603579 219 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AL356280.1-201ENST00000603614 379 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 MIR378J-201ENST00000611988 109 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 ZYXP1-201ENST00000617638 118 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC090517.3-201ENST00000625170 141 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 AC017071.1-201ENST00000564407 2204 ntBASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.78□□□□□ -1.96
CCDC28AQ8IWP9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 RNA5SP201-201ENST00000410316 124 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 HMGB3P2-201ENST00000411913 584 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 MRPS18CP6-201ENST00000423587 223 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 TOMM22P6-201ENST00000465035 409 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC090096.1-201ENST00000489168 390 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 RN7SL323P-201ENST00000494712 295 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC145146.1-201ENST00000496370 254 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC105758.1-201ENST00000506038 399 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 RN7SKP43-201ENST00000516173 320 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 RN7SKP272-201ENST00000516988 232 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AL442663.2-201ENST00000554385 511 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC020661.2-201ENST00000560114 134 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 SNRPGP17-201ENST00000603780 214 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AL162713.1-201ENST00000604480 262 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AL138963.2-201ENST00000605137 226 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 AL355802.3-201ENST00000607571 545 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 MIR1244-1-201ENST00000612829 85 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 MIR1244-3-201ENST00000635744 85 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 MIR1244-2-201ENST00000636449 85 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms