Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AL161431.1-201ENST00000618966 4205 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 MIR26A1-201ENST00000362205 77 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNU6-827P-201ENST00000365553 106 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNU6-933P-201ENST00000384424 107 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNU6-790P-201ENST00000384479 105 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNU6-331P-201ENST00000384724 107 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 U3.26-201ENST00000391236 204 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC087499.2-201ENST00000432861 149 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AL031274.1-201ENST00000450334 232 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC090525.1-201ENST00000479116 478 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 SEM1P1-201ENST00000506694 209 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 ACA59.1-201ENST00000515966 143 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNA5SP367-201ENST00000516557 118 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RN7SKP282-201ENST00000516824 299 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 RNU6-1183P-201ENST00000517054 60 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC007536.1-201ENST00000533382 349 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 AC009314.1-201ENST00000603871 304 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 MIR6733-201ENST00000635723 61 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 MIR3199-2-201ENST00000636243 86 ntBASIC3.31□□□□□ -1.88
VPS53Q5VIR6 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS53Q5VIR6 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 Y_RNA.148-201ENST00000363557 117 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 RNU6-72P-201ENST00000384285 79 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AL138827.1-201ENST00000402666 306 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AL513475.1-201ENST00000406602 315 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC096649.2-201ENST00000416186 393 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 MCFD2P1-201ENST00000417812 300 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC243428.1-201ENST00000421099 264 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC112220.1-201ENST00000434628 355 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC105272.1-201ENST00000438604 198 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 U8.21-201ENST00000459536 136 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 RPL31P41-201ENST00000477967 372 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AL049873.1-201ENST00000480540 376 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 Y_RNA.687-201ENST00000516558 91 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC023442.1-201ENST00000531247 422 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 ZNF861P-201ENST00000588126 639 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 MIR7106-201ENST00000612419 65 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC083806.3-201ENST00000614016 455 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC091925.1-201ENST00000623204 462 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC090617.7-201ENST00000623952 126 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 AC138627.2-201ENST00000624202 601 ntBASIC3.3□□□□□ -1.88
VPS53Q5VIR6 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS53Q5VIR6 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 U8.8-201ENST00000365399 135 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 U8.9-201ENST00000365667 134 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 Z98749.2-208ENST00000381646 500 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RNU6-1032P-201ENST00000384100 107 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RNU6-658P-201ENST00000384606 106 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 SNORA26.7-201ENST00000391288 122 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AL356057.3-201ENST00000402607 340 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC023141.4-201ENST00000412031 328 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RPL9P9-202ENST00000466501 579 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RPS26P21-201ENST00000475397 348 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RN7SL297P-201ENST00000483161 293 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC022493.2-201ENST00000506122 481 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 RNU6-264P-201ENST00000517134 104 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 SNORA31.26-201ENST00000517250 137 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 GTF3AP2-201ENST00000557014 266 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 LINC00933-203ENST00000559812 219 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 SUB1P3-201ENST00000564581 315 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 U4.7-201ENST00000638126 106 ntBASIC3.29□□□□□ -1.88
VPS53Q5VIR6 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS53Q5VIR6 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU6-1317P-201ENST00000364582 104 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU5E-7P-201ENST00000365290 117 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU1-115P-201ENST00000365329 160 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU6-750P-201ENST00000390946 107 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 AL591034.2-201ENST00000402839 359 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 U3.37-201ENST00000408528 213 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 RNU2-49P-201ENST00000410666 184 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS53Q5VIR6 AC108938.1-201ENST00000451204 136 ntBASIC3.28□□□□□ -1.88
VPS53Q5VIR6 GSTA11P-201ENST00000452866 669 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms