Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR26B-201ENST00000362251 77 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 SNORD33-201ENST00000362761 85 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-960P-201ENST00000364056 120 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 MIR301A-201ENST00000385261 86 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 MIR618-201ENST00000385287 98 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.578-201ENST00000390903 88 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 MTCO1P21-201ENST00000416634 589 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC117454.1-201ENST00000491120 168 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP121-201ENST00000516537 101 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-667P-201ENST00000517186 102 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AP003072.2-201ENST00000527756 676 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 MIR544B-201ENST00000582372 78 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC073544.2-201ENST00000601155 540 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC018889.1-201ENST00000605372 397 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC072039.2-201ENST00000608883 439 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 Z82243.1-201ENST00000609432 473 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 AC092656.1-203ENST00000624134 423 ntBASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.85□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-843P-201ENST00000384454 104 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-1222P-201ENST00000384615 107 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 ELOCP17-201ENST00000414751 326 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 ELOCP9-201ENST00000418624 239 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 RPS3AP37-201ENST00000419176 745 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AL008629.1-201ENST00000438615 184 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 UBL5P1-201ENST00000507979 193 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AP003484.1-201ENST00000530974 250 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC137800.2-201ENST00000574375 120 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC092106.3-201ENST00000611308 722 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 MIR8065-201ENST00000620577 100 ntBASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.84□□□□□ -2.27
CCDC88AQ3V6T2 AC092104.1-201ENST00000497346 1441 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-1176P-201ENST00000390955 107 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 VPS26BP1-201ENST00000417155 755 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 AC016831.2-201ENST00000417179 352 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 RPL23AP30-201ENST00000432419 501 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 MTCO1P44-201ENST00000441935 243 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 HMGB1P30-201ENST00000492455 606 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 AC025465.3-201ENST00000510570 311 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-1003P-201ENST00000517099 105 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.84□□□□□ -2.28
CCDC88AQ3V6T2 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 Y_RNA.192-201ENST00000363977 102 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-1164P-201ENST00000364428 107 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-621P-201ENST00000364752 109 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC139712.2-201ENST00000424302 339 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 MTND5P15-201ENST00000434246 349 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC134050.1-201ENST00000495088 933 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC021146.2-201ENST00000504736 556 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC079140.3-201ENST00000511111 550 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 NIFKP6-201ENST00000598115 845 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC004908.3-201ENST00000610248 625 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC027335.2-201ENST00000624030 375 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC090517.3-201ENST00000625170 141 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 AC103706.2-201ENST00000638080 240 ntBASIC0.83□□□□□ -2.28
CCDC88AQ3V6T2 RNA5SP347-201ENST00000362445 119 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-112P-201ENST00000363599 104 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 SNORD115.1-201ENST00000391109 76 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 GTF2IP13-201ENST00000438487 386 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 MTND1P30-201ENST00000441241 901 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 RPS20P10-201ENST00000451209 253 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC116353.3-201ENST00000511215 249 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC025678.1-201ENST00000567861 338 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC243829.3-201ENST00000622177 108 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC073544.1-201ENST00000600110 1595 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-511P-201ENST00000363496 107 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 RNU6-142P-201ENST00000384019 107 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 MIR508-201ENST00000384857 115 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 RPL26P26-201ENST00000480251 434 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 AC104629.1-201ENST00000494226 508 ntBASIC0.82□□□□□ -2.28
CCDC88AQ3V6T2 MTCO3P28-201ENST00000513351 515 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms