Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU7-138P-201ENST00000459479 64 ntBASIC1.84□□□□□ -2.11
LIM2P55344 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.84□□□□□ -2.11
LIM2P55344 Y_RNA.693-201ENST00000516641 110 ntBASIC1.84□□□□□ -2.11
LIM2P55344 AC034114.1-201ENST00000520293 285 ntBASIC1.84□□□□□ -2.11
LIM2P55344 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.84□□□□□ -2.11
LIM2P55344 MIR3935-201ENST00000583472 104 ntBASIC1.84□□□□□ -2.11
LIM2P55344 AC078899.2-201ENST00000595282 212 ntBASIC1.84□□□□□ -2.11
LIM2P55344 AC123912.5-201ENST00000605470 343 ntBASIC1.84□□□□□ -2.11
LIM2P55344 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.84□□□□□ -2.12
LIM2P55344 AP006437.1-201ENST00000641440 3685 ntBASIC1.84□□□□□ -2.12
LIM2P55344 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
LIM2P55344 SNORD114-1-201ENST00000362705 72 ntBASIC1.83□□□□□ -2.12
LIM2P55344 RNU4-52P-201ENST00000384209 138 ntBASIC1.83□□□□□ -2.12
LIM2P55344 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LIM2P55344 RNU6-648P-201ENST00000410190 107 ntBASIC1.83□□□□□ -2.12
LIM2P55344 RN7SKP61-201ENST00000410642 295 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.83□□□□□ -2.12
LIM2P55344 AC243964.1-201ENST00000441814 261 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.83□□□□□ -2.12
LIM2P55344 CCDC34P1-201ENST00000507441 517 ntBASIC1.83□□□□□ -2.12
LIM2P55344 SNORA14.1-201ENST00000516113 141 ntBASIC1.83□□□□□ -2.12
LIM2P55344 RNU6-189P-201ENST00000516120 101 ntBASIC1.83□□□□□ -2.12
LIM2P55344 RNU6-835P-201ENST00000516974 104 ntBASIC1.83□□□□□ -2.12
LIM2P55344 CENPUP1-201ENST00000526649 1202 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.83□□□□□ -2.12
LIM2P55344 MIR3136-201ENST00000583498 78 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AC018889.1-201ENST00000605372 397 ntBASIC1.83□□□□□ -2.12
LIM2P55344 DUXAP9-208ENST00000622815 614 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AC012640.5-201ENST00000623897 319 ntBASIC1.83□□□□□ -2.12
LIM2P55344 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.83□□□□□ -2.12
LIM2P55344 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.83□□□□□ -2.12
LIM2P55344 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
LIM2P55344 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
LIM2P55344 SNORA69-201ENST00000383895 132 ntBASIC1.82□□□□□ -2.12
LIM2P55344 RNU6-611P-201ENST00000384276 104 ntBASIC1.82□□□□□ -2.12
LIM2P55344 MIR544A-201ENST00000384855 91 ntBASIC1.82□□□□□ -2.12
LIM2P55344 RNU6-1106P-201ENST00000390845 107 ntBASIC1.82□□□□□ -2.12
LIM2P55344 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
LIM2P55344 SNORD23.1-201ENST00000408212 104 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.82□□□□□ -2.12
LIM2P55344 EDDM3CP-201ENST00000415977 425 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 AC078809.1-201ENST00000427601 140 ntBASIC1.82□□□□□ -2.12
LIM2P55344 SRIP2-201ENST00000428470 166 ntBASIC1.82□□□□□ -2.12
LIM2P55344 CBX3P6-201ENST00000430257 527 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 MTCO2P3-201ENST00000442543 421 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 RPL30P12-201ENST00000474666 353 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC018868.1-201ENST00000491307 315 ntBASIC1.82□□□□□ -2.12
LIM2P55344 Y_RNA.654-201ENST00000497848 106 ntBASIC1.82□□□□□ -2.12
LIM2P55344 RNU7-193P-201ENST00000516723 65 ntBASIC1.82□□□□□ -2.12
LIM2P55344 SNORD60.2-201ENST00000516883 86 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.82□□□□□ -2.12
LIM2P55344 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.82□□□□□ -2.12
LIM2P55344 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.82□□□□□ -2.12
LIM2P55344 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.82□□□□□ -2.12
LIM2P55344 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.82□□□□□ -2.12
LIM2P55344 MIR3126-201ENST00000577443 74 ntBASIC1.82□□□□□ -2.12
LIM2P55344 MIR5583-1-201ENST00000580941 59 ntBASIC1.82□□□□□ -2.12
LIM2P55344 MIR4448-201ENST00000584360 86 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.82□□□□□ -2.12
LIM2P55344 AL161423.1-201ENST00000613700 262 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC015540.1-201ENST00000615828 501 ntBASIC1.82□□□□□ -2.12
LIM2P55344 AC068792.1-201ENST00000621354 417 ntBASIC1.82□□□□□ -2.12
LIM2P55344 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.82□□□□□ -2.12
LIM2P55344 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.82□□□□□ -2.12
LIM2P55344 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LIM2P55344 AC121333.1-201ENST00000567488 2709 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNU6-38P-201ENST00000384085 107 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNU6-1274P-201ENST00000384557 107 ntBASIC1.81□□□□□ -2.12
LIM2P55344 MIR514A2-201ENST00000385131 88 ntBASIC1.81□□□□□ -2.12
LIM2P55344 MIR514A3-201ENST00000385132 88 ntBASIC1.81□□□□□ -2.12
LIM2P55344 SNORD37.1-201ENST00000390968 65 ntBASIC1.81□□□□□ -2.12
LIM2P55344 SNORA26.3-201ENST00000391119 136 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNU2-20P-201ENST00000410425 191 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNU6-293P-201ENST00000411259 106 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNA5SP270-201ENST00000411361 118 ntBASIC1.81□□□□□ -2.12
LIM2P55344 POLHP1-201ENST00000411806 470 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.81□□□□□ -2.12
LIM2P55344 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.81□□□□□ -2.12
LIM2P55344 EIF1AXP1-201ENST00000419267 435 ntBASIC1.81□□□□□ -2.12
LIM2P55344 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.81□□□□□ -2.12
LIM2P55344 RPL23AP95-201ENST00000426806 265 ntBASIC1.81□□□□□ -2.12
LIM2P55344 SNAP23P1-201ENST00000433229 246 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.81□□□□□ -2.12
LIM2P55344 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.81□□□□□ -2.12
LIM2P55344 IPO7P1-201ENST00000442031 636 ntBASIC1.81□□□□□ -2.12
LIM2P55344 MTCO2P7-201ENST00000446518 666 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNU6-333P-201ENST00000459117 107 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AC019235.1-201ENST00000503847 207 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNA5SP401-201ENST00000515920 127 ntBASIC1.81□□□□□ -2.12
LIM2P55344 RNA5SP364-201ENST00000516938 78 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AP000763.2-201ENST00000540641 163 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AC121758.2-201ENST00000553271 193 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AC027807.1-201ENST00000559921 996 ntBASIC1.81□□□□□ -2.12
LIM2P55344 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.81□□□□□ -2.12
LIM2P55344 HMGB1P33-201ENST00000563485 527 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms