Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.84□□□□□ -1.95
CTCFP49711 AC083904.1-201ENST00000487828 231 ntBASIC2.84□□□□□ -1.95
CTCFP49711 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.84□□□□□ -1.95
CTCFP49711 AC069113.1-201ENST00000517763 267 ntBASIC2.84□□□□□ -1.95
CTCFP49711 BTF3P12-201ENST00000519620 469 ntBASIC2.84□□□□□ -1.95
CTCFP49711 GNAI2P1-201ENST00000541815 315 ntBASIC2.84□□□□□ -1.95
CTCFP49711 SNRPGP18-201ENST00000553000 214 ntBASIC2.84□□□□□ -1.95
CTCFP49711 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.84□□□□□ -1.95
CTCFP49711 MIR3117-201ENST00000584034 78 ntBASIC2.84□□□□□ -1.95
CTCFP49711 MIR5692C1-201ENST00000585309 91 ntBASIC2.84□□□□□ -1.95
CTCFP49711 AL121757.2-201ENST00000611223 313 ntBASIC2.84□□□□□ -1.95
CTCFP49711 U4.7-201ENST00000638126 106 ntBASIC2.84□□□□□ -1.95
CTCFP49711 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CTCFP49711 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CTCFP49711 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.84□□□□□ -1.96
CTCFP49711 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
CTCFP49711 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.83□□□□□ -1.96
CTCFP49711 AC138393.1-203ENST00000327086 343 ntBASIC2.83□□□□□ -1.96
CTCFP49711 SNORD116-20-201ENST00000384529 92 ntBASIC2.83□□□□□ -1.96
CTCFP49711 EIF4E2P1-201ENST00000393781 255 ntBASIC2.83□□□□□ -1.96
CTCFP49711 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CTCFP49711 RNA5SP118-201ENST00000410385 109 ntBASIC2.83□□□□□ -1.96
CTCFP49711 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.83□□□□□ -1.96
CTCFP49711 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.83□□□□□ -1.96
CTCFP49711 NFU1P2-201ENST00000448700 469 ntBASIC2.83□□□□□ -1.96
CTCFP49711 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.83□□□□□ -1.96
CTCFP49711 AC006026.2-201ENST00000457376 180 ntBASIC2.83□□□□□ -1.96
CTCFP49711 RNU7-138P-201ENST00000459479 64 ntBASIC2.83□□□□□ -1.96
CTCFP49711 SNORA19.2-201ENST00000516013 114 ntBASIC2.83□□□□□ -1.96
CTCFP49711 RNU5B-3P-201ENST00000516601 115 ntBASIC2.83□□□□□ -1.96
CTCFP49711 RNA5SP490-201ENST00000517141 136 ntBASIC2.83□□□□□ -1.96
CTCFP49711 SNORA31.23-201ENST00000517219 133 ntBASIC2.83□□□□□ -1.96
CTCFP49711 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.83□□□□□ -1.96
CTCFP49711 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.83□□□□□ -1.96
CTCFP49711 RNU6-85P-201ENST00000605989 107 ntBASIC2.83□□□□□ -1.96
CTCFP49711 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
CTCFP49711 MIR3529-201ENST00000637713 78 ntBASIC2.83□□□□□ -1.96
CTCFP49711 RBBP8P1-201ENST00000449447 1844 ntBASIC2.82□□□□□ -1.96
CTCFP49711 DEFA7P-201ENST00000382676 285 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AL365400.1-201ENST00000431854 640 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AC011816.1-201ENST00000441346 546 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.82□□□□□ -1.96
CTCFP49711 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.82□□□□□ -1.96
CTCFP49711 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.82□□□□□ -1.96
CTCFP49711 AC013470.1-201ENST00000453438 462 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AC080013.2-201ENST00000460866 323 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AP001025.1-201ENST00000486139 332 ntBASIC2.82□□□□□ -1.96
CTCFP49711 RNA5SP480-201ENST00000516840 109 ntBASIC2.82□□□□□ -1.96
CTCFP49711 COPS8P3-201ENST00000526024 482 ntBASIC2.82□□□□□ -1.96
CTCFP49711 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.82□□□□□ -1.96
CTCFP49711 CTHRC1P1-201ENST00000605383 469 ntBASIC2.82□□□□□ -1.96
CTCFP49711 RNU6-91P-201ENST00000607774 107 ntBASIC2.82□□□□□ -1.96
CTCFP49711 FAM157A-202ENST00000615155 405 ntBASIC2.82□□□□□ -1.96
CTCFP49711 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.82□□□□□ -1.96
CTCFP49711 AC010297.1-201ENST00000623948 149 ntBASIC2.82□□□□□ -1.96
CTCFP49711 AC090617.10-201ENST00000624308 134 ntBASIC2.82□□□□□ -1.96
CTCFP49711 MTND4P27-201ENST00000450813 1354 ntBASIC2.82□□□□□ -1.96
CTCFP49711 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CTCFP49711 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.81□□□□□ -1.96
CTCFP49711 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CTCFP49711 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
CTCFP49711 Y_RNA.157-201ENST00000363638 102 ntBASIC2.81□□□□□ -1.96
CTCFP49711 RNU6-487P-201ENST00000365430 104 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AL133475.1-201ENST00000404414 305 ntBASIC2.81□□□□□ -1.96
CTCFP49711 RN7SKP32-201ENST00000410167 303 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AC074117.2-201ENST00000417130 397 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AL117339.3-201ENST00000418733 162 ntBASIC2.81□□□□□ -1.96
CTCFP49711 USP9YP20-201ENST00000419224 558 ntBASIC2.81□□□□□ -1.96
CTCFP49711 CYCSP49-201ENST00000420810 319 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.81□□□□□ -1.96
CTCFP49711 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.81□□□□□ -1.96
CTCFP49711 AL441985.1-201ENST00000457727 251 ntBASIC2.81□□□□□ -1.96
CTCFP49711 RNU7-66P-201ENST00000459469 62 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AC005840.1-201ENST00000498412 377 ntBASIC2.81□□□□□ -1.96
CTCFP49711 TRMT112P2-201ENST00000512910 132 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.81□□□□□ -1.96
CTCFP49711 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.81□□□□□ -1.96
CTCFP49711 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.81□□□□□ -1.96
CTCFP49711 AC021646.1-201ENST00000605469 484 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AL121917.1-203ENST00000605534 577 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.81□□□□□ -1.96
CTCFP49711 AC006504.8-201ENST00000621046 635 ntBASIC2.81□□□□□ -1.96
CTCFP49711 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.81□□□□□ -1.96
CTCFP49711 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CTCFP49711 HAUS6P2-201ENST00000433254 2404 ntBASIC2.81□□□□□ -1.96
CTCFP49711 AL359854.1-201ENST00000614203 1594 ntBASIC2.8□□□□□ -1.96
CTCFP49711 Y_RNA.224-201ENST00000364308 111 ntBASIC2.8□□□□□ -1.96
CTCFP49711 Y_RNA.373-201ENST00000365600 103 ntBASIC2.8□□□□□ -1.96
CTCFP49711 RNU1-138P-201ENST00000384093 164 ntBASIC2.8□□□□□ -1.96
CTCFP49711 RNU6-622P-201ENST00000384272 103 ntBASIC2.8□□□□□ -1.96
CTCFP49711 RNU6-1140P-201ENST00000410517 106 ntBASIC2.8□□□□□ -1.96
CTCFP49711 RNU6-1148P-201ENST00000410992 104 ntBASIC2.8□□□□□ -1.96
CTCFP49711 RPL30P16-201ENST00000419341 429 ntBASIC2.8□□□□□ -1.96
CTCFP49711 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.8□□□□□ -1.96
CTCFP49711 FAM206BP-201ENST00000510179 541 ntBASIC2.8□□□□□ -1.96
CTCFP49711 AC109479.2-201ENST00000517842 174 ntBASIC2.8□□□□□ -1.96
CTCFP49711 AP005597.4-201ENST00000526762 229 ntBASIC2.8□□□□□ -1.96
CTCFP49711 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.8□□□□□ -1.96
CTCFP49711 AL133241.1-201ENST00000556832 487 ntBASIC2.8□□□□□ -1.96
CTCFP49711 AC023824.2-201ENST00000566185 400 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms