Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTCO3P18-201ENST00000440206 761 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXC9P31274 AC006026.2-201ENST00000457376 180 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 MED28P2-201ENST00000475771 317 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 RPL31P41-201ENST00000477967 372 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 RPL7P43-201ENST00000478876 753 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 SCARNA17.1-201ENST00000516211 143 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 SCARNA17.2-201ENST00000516334 143 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AP005597.4-201ENST00000526762 229 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC9P31274 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC9P31274 MIR548S-201ENST00000581352 82 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AC005730.3-201ENST00000583067 366 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 MIR3942-201ENST00000585264 109 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL391813.1-201ENST00000603098 260 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AL121917.1-203ENST00000605534 577 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 SCARNA17.4-201ENST00000614296 143 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC9P31274 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.71□□□□□ -1.98
HOXC9P31274 RMST_7.1-201ENST00000621935 268 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 DUXAP9-208ENST00000622815 614 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 AC010297.1-201ENST00000623948 149 ntBASIC2.71□□□□□ -1.98
HOXC9P31274 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HOXC9P31274 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXC9P31274 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXC9P31274 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
HOXC9P31274 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXC9P31274 Y_RNA.72-201ENST00000362894 103 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-1159P-201ENST00000362933 107 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-428P-201ENST00000362942 107 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-1180P-201ENST00000364935 107 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 Y_RNA.303-201ENST00000364998 94 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-827P-201ENST00000365553 106 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 SNORA80E-201ENST00000384744 137 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXC9P31274 VN1R36P-201ENST00000414936 291 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 MTND4LP11-201ENST00000422184 280 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC9P31274 RN7SL499P-201ENST00000481141 276 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU5F-8P-201ENST00000515941 111 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-377P-201ENST00000515965 102 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 RNU6-256P-201ENST00000516747 97 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC9P31274 AC110588.1-201ENST00000559699 137 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 AL137847.3-201ENST00000611521 109 ntBASIC2.7□□□□□ -1.98
HOXC9P31274 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HOXC9P31274 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXC9P31274 SNORD56.1-201ENST00000362913 68 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 RNA5SP213-201ENST00000391031 106 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC138393.2-201ENST00000414742 246 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC004383.1-201ENST00000438135 289 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL359672.1-201ENST00000442302 409 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL353572.1-201ENST00000442490 417 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 OSTCP8-201ENST00000445117 448 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXC9P31274 AL441985.1-201ENST00000457727 251 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 PMCHL2-203ENST00000457791 237 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXC9P31274 AP001324.2-201ENST00000461163 319 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXC9P31274 AK3P2-201ENST00000507976 429 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 RNU6-826P-201ENST00000516827 104 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 SNORA20.3-201ENST00000516880 132 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 RN7SKP256-201ENST00000517201 314 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.69□□□□□ -1.98
HOXC9P31274 AC087241.2-201ENST00000535801 324 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 SCOCP1-201ENST00000554676 349 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC103996.1-201ENST00000555468 102 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXC9P31274 AL670379.10-201ENST00000604330 253 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 ELOCP5-201ENST00000604924 333 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AL670379.9-201ENST00000605428 253 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 AC138627.2-201ENST00000624202 601 ntBASIC2.69□□□□□ -1.98
HOXC9P31274 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HOXC9P31274 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXC9P31274 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXC9P31274 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXC9P31274 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXC9P31274 RNU6-214P-201ENST00000384130 107 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 RNU6-767P-201ENST00000384132 107 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 RPL21P75-201ENST00000396599 483 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 RPL21P28-201ENST00000401418 483 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC9P31274 IFNA20P-201ENST00000436840 528 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 MTND4LP16-201ENST00000440828 295 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXC9P31274 MTND3P10-201ENST00000450967 341 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 PPP1R2P5-201ENST00000457256 603 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 RPL21P39-201ENST00000463605 483 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC087190.1-201ENST00000484462 480 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC093591.1-201ENST00000491435 481 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 RPL21P16-201ENST00000495531 483 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 TRBVA-201ENST00000498804 316 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 SNORA25.11-201ENST00000515935 105 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 SNORA31.6-201ENST00000516241 130 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC9P31274 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC9P31274 AC118273.2-201ENST00000532092 465 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXC9P31274 AL121579.1-201ENST00000555129 305 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms