Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 Y_RNA.358-201ENST00000365491 99 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 SNORD14.1-201ENST00000365609 90 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 RNU6-968P-201ENST00000384076 107 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 SNORA29-201ENST00000384183 140 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 SNORA36A-201ENST00000384221 132 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HOXD3P31249 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HOXD3P31249 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD3P31249 AL358453.1-201ENST00000422522 250 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD3P31249 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AC004383.1-201ENST00000438135 289 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 IPO7P1-201ENST00000442031 636 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD3P31249 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD3P31249 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD3P31249 AC010655.3-201ENST00000478818 450 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 RNU6-635P-201ENST00000516651 102 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 RNU7-4P-201ENST00000516961 62 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AC107934.2-201ENST00000518653 310 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AC144568.1-201ENST00000520139 137 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD3P31249 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.6□□□□□ -1.99
HOXD3P31249 AL137843.1-201ENST00000605078 385 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 7SK.10-201ENST00000621414 298 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD3P31249 AC004944.1-201ENST00000517807 3059 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD3P31249 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD3P31249 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD3P31249 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD3P31249 RNU6-622P-201ENST00000384272 103 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 RNU6-196P-201ENST00000384315 107 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 Y_RNA.504-201ENST00000384481 104 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 MIR487A-201ENST00000385009 80 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 MIR190B-201ENST00000401119 79 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 Y_RNA.592-201ENST00000410274 109 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC126124.2-201ENST00000413542 321 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD3P31249 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD3P31249 AC002075.2-201ENST00000425207 252 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 MTCYBP9-201ENST00000431021 303 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXD3P31249 AL353705.4-201ENST00000449661 238 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC012308.1-201ENST00000451232 178 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD3P31249 RN7SKP210-201ENST00000459176 261 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 RNU7-23P-201ENST00000459465 62 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AF186996.7-201ENST00000492781 209 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC104564.1-201ENST00000493028 407 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 PHBP14-201ENST00000512887 367 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 MTCO2P24-201ENST00000515611 426 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 RNU7-175P-201ENST00000515915 61 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 RNU5F-8P-201ENST00000515941 111 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 RNU6-475P-201ENST00000516073 104 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC040926.1-201ENST00000530195 238 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 HSPE1P4-201ENST00000550617 308 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD3P31249 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.59□□□□□ -1.99
HOXD3P31249 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD3P31249 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD3P31249 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 U2.1-201ENST00000618978 145 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC006386.2-201ENST00000624491 75 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AC012005.1-201ENST00000624575 75 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 AP000560.1-201ENST00000624150 1937 ntBASIC2.59□□□□□ -1.99
HOXD3P31249 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
HOXD3P31249 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.59□□□□□ -2
HOXD3P31249 AC010889.1-201ENST00000566193 2666 ntBASIC2.59□□□□□ -2
HOXD3P31249 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HOXD3P31249 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
HOXD3P31249 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 AC092435.3-201ENST00000565538 3654 ntBASIC2.58□□□□□ -2
HOXD3P31249 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 Z83843.1-201ENST00000604070 3685 ntBASIC2.58□□□□□ -2
HOXD3P31249 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.58□□□□□ -2
HOXD3P31249 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
HOXD3P31249 SET-203ENST00000372688 801 ntTSL 2 BASIC2.58□□□□□ -2
HOXD3P31249 RNU6-1286P-201ENST00000383871 107 ntBASIC2.58□□□□□ -2
HOXD3P31249 RNU6-19P-201ENST00000384718 107 ntBASIC2.58□□□□□ -2
HOXD3P31249 MIR32-201ENST00000384965 70 ntBASIC2.58□□□□□ -2
HOXD3P31249 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.58□□□□□ -2
HOXD3P31249 RPL23AP95-201ENST00000426806 265 ntBASIC2.58□□□□□ -2
HOXD3P31249 RPL23AP22-201ENST00000437556 453 ntBASIC2.58□□□□□ -2
HOXD3P31249 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.58□□□□□ -2
HOXD3P31249 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.58□□□□□ -2
HOXD3P31249 AC009296.1-201ENST00000443146 155 ntBASIC2.58□□□□□ -2
HOXD3P31249 RPL39P29-201ENST00000447779 157 ntBASIC2.58□□□□□ -2
HOXD3P31249 MTCO3P8-201ENST00000453691 755 ntBASIC2.58□□□□□ -2
HOXD3P31249 snoU13.30-201ENST00000458951 104 ntBASIC2.58□□□□□ -2
HOXD3P31249 RPS4XP22-201ENST00000480755 780 ntBASIC2.58□□□□□ -2
HOXD3P31249 AC110794.1-201ENST00000505816 425 ntBASIC2.58□□□□□ -2
HOXD3P31249 MRPS35P2-201ENST00000508242 191 ntBASIC2.58□□□□□ -2
HOXD3P31249 SNORA40.14-201ENST00000516543 86 ntBASIC2.58□□□□□ -2
HOXD3P31249 Y_RNA.721-201ENST00000517207 102 ntBASIC2.58□□□□□ -2
HOXD3P31249 AC131281.1-201ENST00000522984 164 ntBASIC2.58□□□□□ -2
HOXD3P31249 AC022616.4-201ENST00000522985 181 ntBASIC2.58□□□□□ -2
HOXD3P31249 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms