Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH3P20585 AC107626.1-201ENST00000471084 183 ntBASIC2.48□□□□□ -2.01
MSH3P20585 RPL23AP70-201ENST00000483361 460 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AK3P2-201ENST00000507976 429 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH3P20585 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH3P20585 RNA5SP320-201ENST00000516263 124 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH3P20585 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH3P20585 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH3P20585 MIR5194-201ENST00000582634 120 ntBASIC2.48□□□□□ -2.01
MSH3P20585 MIR4795-201ENST00000584182 89 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AL391813.1-201ENST00000603098 260 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC016727.1-205ENST00000605437 569 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC244517.12-201ENST00000623581 663 ntBASIC2.48□□□□□ -2.01
MSH3P20585 MIR1302-1-201ENST00000637932 143 ntBASIC2.48□□□□□ -2.01
MSH3P20585 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH3P20585 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH3P20585 AC135776.4-201ENST00000624300 1904 ntBASIC2.48□□□□□ -2.01
MSH3P20585 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH3P20585 MTND4P23-201ENST00000447723 1363 ntBASIC2.48□□□□□ -2.01
MSH3P20585 ZNF271P-202ENST00000465539 1970 ntBASIC2.47□□□□□ -2.01
MSH3P20585 RNU6-858P-201ENST00000362436 107 ntBASIC2.47□□□□□ -2.01
MSH3P20585 Y_RNA.151-201ENST00000363566 112 ntBASIC2.47□□□□□ -2.01
MSH3P20585 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH3P20585 RNU6-843P-201ENST00000384454 104 ntBASIC2.47□□□□□ -2.01
MSH3P20585 RNU6-1106P-201ENST00000390845 107 ntBASIC2.47□□□□□ -2.01
MSH3P20585 RNA5SP181-201ENST00000410246 98 ntBASIC2.47□□□□□ -2.01
MSH3P20585 RNU6-325P-201ENST00000411132 105 ntBASIC2.47□□□□□ -2.01
MSH3P20585 PTGES3P4-201ENST00000426243 356 ntBASIC2.47□□□□□ -2.01
MSH3P20585 RPS15AP10-201ENST00000432472 382 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.47□□□□□ -2.01
MSH3P20585 RPS15AP7-201ENST00000439294 405 ntBASIC2.47□□□□□ -2.01
MSH3P20585 Y_RNA.635-201ENST00000459041 101 ntBASIC2.47□□□□□ -2.01
MSH3P20585 MED28P2-201ENST00000475771 317 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH3P20585 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.47□□□□□ -2.01
MSH3P20585 SNORA31.23-201ENST00000517219 133 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC093027.1-201ENST00000546698 429 ntBASIC2.47□□□□□ -2.01
MSH3P20585 IMMP1LP2-201ENST00000552954 492 ntBASIC2.47□□□□□ -2.01
MSH3P20585 CPDP1-201ENST00000579660 283 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC103810.1-201ENST00000579873 453 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC090616.3-201ENST00000582184 217 ntBASIC2.47□□□□□ -2.01
MSH3P20585 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.47□□□□□ -2.01
MSH3P20585 VN1R107P-201ENST00000601784 209 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AC009314.1-201ENST00000603871 304 ntBASIC2.47□□□□□ -2.01
MSH3P20585 AL161423.1-201ENST00000613700 262 ntBASIC2.47□□□□□ -2.01
MSH3P20585 MIR6128-201ENST00000615528 109 ntBASIC2.47□□□□□ -2.01
MSH3P20585 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
MSH3P20585 RNU6-527P-201ENST00000363425 104 ntBASIC2.46□□□□□ -2.02
MSH3P20585 RNA5SP456-201ENST00000364002 114 ntBASIC2.46□□□□□ -2.02
MSH3P20585 Y_RNA.387-201ENST00000383918 102 ntBASIC2.46□□□□□ -2.02
MSH3P20585 Y_RNA.482-201ENST00000384377 111 ntBASIC2.46□□□□□ -2.02
MSH3P20585 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
MSH3P20585 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
MSH3P20585 RNU6-293P-201ENST00000411259 106 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH3P20585 AL591043.1-201ENST00000432461 424 ntBASIC2.46□□□□□ -2.02
MSH3P20585 RPS3P1-201ENST00000456781 192 ntBASIC2.46□□□□□ -2.02
MSH3P20585 RPL9P9-202ENST00000466501 579 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AC133134.1-201ENST00000466800 359 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.46□□□□□ -2.02
MSH3P20585 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH3P20585 RPL23AP49-201ENST00000492925 468 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH3P20585 AC116337.1-201ENST00000509680 687 ntBASIC2.46□□□□□ -2.02
MSH3P20585 SCARNA17.1-201ENST00000516211 143 ntBASIC2.46□□□□□ -2.02
MSH3P20585 SCARNA17.2-201ENST00000516334 143 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH3P20585 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH3P20585 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH3P20585 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
MSH3P20585 AL133215.3-201ENST00000609801 448 ntBASIC2.46□□□□□ -2.02
MSH3P20585 SCARNA17.4-201ENST00000614296 143 ntBASIC2.46□□□□□ -2.02
MSH3P20585 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.46□□□□□ -2.02
MSH3P20585 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH3P20585 MIR3529-201ENST00000637713 78 ntBASIC2.46□□□□□ -2.02
MSH3P20585 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH3P20585 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
MSH3P20585 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.45□□□□□ -2.02
MSH3P20585 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 RNU4-79P-201ENST00000362764 141 ntBASIC2.45□□□□□ -2.02
MSH3P20585 RNU6-461P-201ENST00000364195 107 ntBASIC2.45□□□□□ -2.02
MSH3P20585 RNU6-1317P-201ENST00000364582 104 ntBASIC2.45□□□□□ -2.02
MSH3P20585 RNU6-593P-201ENST00000364716 112 ntBASIC2.45□□□□□ -2.02
MSH3P20585 Y_RNA.384-201ENST00000383909 102 ntBASIC2.45□□□□□ -2.02
MSH3P20585 RNU6-748P-201ENST00000384648 107 ntBASIC2.45□□□□□ -2.02
MSH3P20585 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH3P20585 AC004383.1-201ENST00000438135 289 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.45□□□□□ -2.02
MSH3P20585 AP001025.1-201ENST00000486139 332 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC018437.1-201ENST00000492214 406 ntBASIC2.45□□□□□ -2.02
MSH3P20585 RNU5F-8P-201ENST00000515941 111 ntBASIC2.45□□□□□ -2.02
MSH3P20585 Y_RNA.675-201ENST00000516389 149 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC010186.2-204ENST00000537668 439 ntBASIC2.45□□□□□ -2.02
MSH3P20585 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.45□□□□□ -2.02
MSH3P20585 BNIP3P16-201ENST00000589779 534 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 150.8 ms