Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TRAV28-201ENST00000557548 323 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AL355877.2-201ENST00000603670 358 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AC073657.2-201ENST00000605661 303 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.76□□□□□ -1.81
COL6A1P12109 CEP170P1-201ENST00000502249 4587 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
COL6A1P12109 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL6A1P12109 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A1P12109 RNU6-212P-201ENST00000362642 104 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A1P12109 Y_RNA.477-201ENST00000384352 108 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 Y_RNA.518-201ENST00000384552 113 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 RNU6-1093P-201ENST00000391194 107 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.75□□□□□ -1.81
COL6A1P12109 RNU2-33P-201ENST00000410344 192 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 RNA5SP494-201ENST00000410653 129 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A1P12109 MTND4LP30-201ENST00000454092 297 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A1P12109 AP002884.2-201ENST00000471647 395 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.75□□□□□ -1.81
COL6A1P12109 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A1P12109 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.75□□□□□ -1.81
COL6A1P12109 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.75□□□□□ -1.81
COL6A1P12109 RPL23AP78-201ENST00000599928 470 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 AC009318.2-201ENST00000610917 651 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 SDR42E1P4-201ENST00000620894 481 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 AL359693.1-201ENST00000614959 2407 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 Z75746.1-201ENST00000440243 2080 ntBASIC3.75□□□□□ -1.81
COL6A1P12109 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A1P12109 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
COL6A1P12109 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A1P12109 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.74□□□□□ -1.81
COL6A1P12109 FTLP6-201ENST00000355274 422 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 U3.13-201ENST00000364804 214 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 MIR767-201ENST00000390228 109 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 SNORA40C-201ENST00000391285 128 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 HMGN2P8-201ENST00000391458 268 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 MIR548H3-201ENST00000408771 118 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.74□□□□□ -1.81
COL6A1P12109 AC139712.2-201ENST00000424302 339 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.74□□□□□ -1.81
COL6A1P12109 AC007560.1-201ENST00000426912 237 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 MTND3P9-201ENST00000429526 346 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 RPEP5-201ENST00000441137 268 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.74□□□□□ -1.81
COL6A1P12109 LINC01399-202ENST00000458450 244 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.74□□□□□ -1.81
COL6A1P12109 BTF3L4P4-201ENST00000506381 449 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 SNORA31.19-201ENST00000517079 126 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 RNU6-1231P-201ENST00000517185 103 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AC091564.4-201ENST00000533934 2194 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.74□□□□□ -1.81
COL6A1P12109 AC013412.1-201ENST00000610687 192 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 RNVU1-4-201ENST00000612985 164 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AL137790.1-201ENST00000634283 177 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A1P12109 AL365361.1-201ENST00000566942 3481 ntBASIC3.74□□□□□ -1.81
COL6A1P12109 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A1P12109 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A1P12109 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A1P12109 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.73□□□□□ -1.81
COL6A1P12109 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A1P12109 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A1P12109 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
COL6A1P12109 Y_RNA.27-201ENST00000362540 103 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AC096920.1-201ENST00000423991 241 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AL353705.1-201ENST00000433468 480 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 SUMO1P3-201ENST00000439961 304 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AL078601.1-201ENST00000444542 271 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 HMGB1P35-201ENST00000503360 598 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AC025465.3-201ENST00000510570 311 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 RAC1P5-201ENST00000512182 576 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 RNU6-377P-201ENST00000515965 102 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 Y_RNA.713-201ENST00000517013 96 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AC104984.5-201ENST00000586878 94 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A1P12109 AC006504.1-201ENST00000562493 3666 ntBASIC3.73□□□□□ -1.81
COL6A1P12109 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A1P12109 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A1P12109 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL6A1P12109 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A1P12109 RNU6-227P-201ENST00000362865 103 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 SNORD50.1-201ENST00000362987 71 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 RNU1-18P-201ENST00000363062 164 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 Y_RNA.117-201ENST00000363294 101 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 RNU5E-7P-201ENST00000365290 117 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A1P12109 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A1P12109 AC013470.1-201ENST00000453438 462 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A1P12109 AC091179.1-201ENST00000461606 579 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 MTND1P19-201ENST00000511780 315 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 Y_RNA.673-201ENST00000516306 88 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 RNU6-572P-201ENST00000516724 80 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 AC010186.2-204ENST00000537668 439 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 AC005476.1-201ENST00000554427 397 ntBASIC3.72□□□□□ -1.81
COL6A1P12109 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A1P12109 MIR3162-201ENST00000581818 82 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms