Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PROM1O43490 RNA5SP197-201ENST00000363357 119 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RNU6-105P-201ENST00000363909 104 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RNU4-50P-201ENST00000364361 141 ntBASIC3.18□□□□□ -1.9
PROM1O43490 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PROM1O43490 RPS29P13-201ENST00000402041 169 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RPL26P27-201ENST00000414397 437 ntBASIC3.18□□□□□ -1.9
PROM1O43490 MTCO3P19-201ENST00000415864 321 ntBASIC3.18□□□□□ -1.9
PROM1O43490 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.18□□□□□ -1.9
PROM1O43490 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.18□□□□□ -1.9
PROM1O43490 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.18□□□□□ -1.9
PROM1O43490 RNU7-87P-201ENST00000459343 62 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RPS29P27-201ENST00000463711 170 ntBASIC3.18□□□□□ -1.9
PROM1O43490 AC093663.1-201ENST00000497190 394 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RNU6-397P-201ENST00000516226 104 ntBASIC3.18□□□□□ -1.9
PROM1O43490 SNORA64.4-201ENST00000516632 81 ntBASIC3.18□□□□□ -1.9
PROM1O43490 SNORA43.2-201ENST00000516652 128 ntBASIC3.18□□□□□ -1.9
PROM1O43490 RNU6-928P-201ENST00000516876 104 ntBASIC3.18□□□□□ -1.9
PROM1O43490 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.18□□□□□ -1.9
PROM1O43490 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.18□□□□□ -1.9
PROM1O43490 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.18□□□□□ -1.9
PROM1O43490 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.18□□□□□ -1.9
PROM1O43490 MIR4513-201ENST00000581077 86 ntBASIC3.18□□□□□ -1.9
PROM1O43490 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.18□□□□□ -1.9
PROM1O43490 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PROM1O43490 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
PROM1O43490 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.18□□□□□ -1.9
PROM1O43490 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.17□□□□□ -1.9
PROM1O43490 AC009541.1-201ENST00000438279 2662 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RNU6-778P-201ENST00000363269 103 ntBASIC3.17□□□□□ -1.9
PROM1O43490 SNORA38.1-201ENST00000364172 131 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RNU6-1318P-201ENST00000365389 103 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AL591043.1-201ENST00000432461 424 ntBASIC3.17□□□□□ -1.9
PROM1O43490 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AC079354.2-201ENST00000453523 154 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.17□□□□□ -1.9
PROM1O43490 HMGN1P18-201ENST00000457642 277 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RN7SKP210-201ENST00000459176 261 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RPS29P12-201ENST00000460178 152 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.17□□□□□ -1.9
PROM1O43490 AC008155.2-201ENST00000464337 397 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RPL30P10-201ENST00000488148 337 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AC093852.1-201ENST00000503587 266 ntBASIC3.17□□□□□ -1.9
PROM1O43490 RNY3P15-201ENST00000516297 97 ntBASIC3.17□□□□□ -1.9
PROM1O43490 SNORA40.15-201ENST00000516884 107 ntBASIC3.17□□□□□ -1.9
PROM1O43490 AL390123.1-201ENST00000603216 237 ntBASIC3.17□□□□□ -1.9
PROM1O43490 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.17□□□□□ -1.9
PROM1O43490 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.17□□□□□ -1.9
PROM1O43490 U2.21-201ENST00000637295 81 ntBASIC3.17□□□□□ -1.9
PROM1O43490 SRP72P2-201ENST00000344851 1979 ntBASIC3.17□□□□□ -1.9
PROM1O43490 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PROM1O43490 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.17□□□□□ -1.9
PROM1O43490 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PROM1O43490 RNU6-858P-201ENST00000362436 107 ntBASIC3.16□□□□□ -1.9
PROM1O43490 RNU1-33P-201ENST00000364249 162 ntBASIC3.16□□□□□ -1.9
PROM1O43490 SNORA63.7-201ENST00000365579 123 ntBASIC3.16□□□□□ -1.9
PROM1O43490 RNU6-784P-201ENST00000384330 106 ntBASIC3.16□□□□□ -1.9
PROM1O43490 Y_RNA.476-201ENST00000384347 108 ntBASIC3.16□□□□□ -1.9
PROM1O43490 Y_RNA.551-201ENST00000384661 102 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.16□□□□□ -1.9
PROM1O43490 MIR1289-1-201ENST00000408836 144 ntBASIC3.16□□□□□ -1.9
PROM1O43490 Y_RNA.592-201ENST00000410274 109 ntBASIC3.16□□□□□ -1.9
PROM1O43490 RNU6-1245P-201ENST00000411130 106 ntBASIC3.16□□□□□ -1.9
PROM1O43490 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PROM1O43490 AC005326.1-201ENST00000429197 123 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AL353705.1-201ENST00000433468 480 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AC098831.1-201ENST00000440661 216 ntBASIC3.16□□□□□ -1.9
PROM1O43490 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.16□□□□□ -1.9
PROM1O43490 RN7SKP272-201ENST00000516988 232 ntBASIC3.16□□□□□ -1.9
PROM1O43490 SNORA31.21-201ENST00000517180 77 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AC104027.1-201ENST00000521887 300 ntBASIC3.16□□□□□ -1.9
PROM1O43490 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.16□□□□□ -1.9
PROM1O43490 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.16□□□□□ -1.9
PROM1O43490 MIR8057-201ENST00000620957 69 ntBASIC3.16□□□□□ -1.9
PROM1O43490 AC241585.2-209ENST00000638217 143 ntBASIC3.16□□□□□ -1.9
PROM1O43490 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.16□□□□□ -1.9
PROM1O43490 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.16□□□□□ -1.9
PROM1O43490 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
PROM1O43490 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.15□□□□□ -1.9
PROM1O43490 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
PROM1O43490 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
PROM1O43490 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
PROM1O43490 RNU6-874P-201ENST00000362390 105 ntBASIC3.15□□□□□ -1.91
PROM1O43490 Y_RNA.396-201ENST00000383949 103 ntBASIC3.15□□□□□ -1.91
PROM1O43490 Y_RNA.405-201ENST00000383979 100 ntBASIC3.15□□□□□ -1.91
PROM1O43490 Y_RNA.451-201ENST00000384200 100 ntBASIC3.15□□□□□ -1.91
PROM1O43490 RNU6-198P-201ENST00000384258 104 ntBASIC3.15□□□□□ -1.91
PROM1O43490 RNU6-1035P-201ENST00000384477 107 ntBASIC3.15□□□□□ -1.91
PROM1O43490 SNORD116-20-201ENST00000384529 92 ntBASIC3.15□□□□□ -1.91
PROM1O43490 Y_RNA.524-201ENST00000384564 100 ntBASIC3.15□□□□□ -1.91
PROM1O43490 Y_RNA.561-201ENST00000384694 100 ntBASIC3.15□□□□□ -1.91
PROM1O43490 MIR518D-201ENST00000385014 87 ntBASIC3.15□□□□□ -1.91
PROM1O43490 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PROM1O43490 MIR888-201ENST00000401186 77 ntBASIC3.15□□□□□ -1.91
PROM1O43490 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.15□□□□□ -1.91
PROM1O43490 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.15□□□□□ -1.91
PROM1O43490 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.15□□□□□ -1.91
PROM1O43490 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PROM1O43490 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms