Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AF127577.6-201ENST00000623352 2191 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA3O43365 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.11□□□□□ -1.91
HOXA3O43365 MIR208A-201ENST00000362287 71 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 SNORA63.1-201ENST00000362493 131 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RNU6-529P-201ENST00000363383 104 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RNU6-290P-201ENST00000365212 101 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 SNORA5A-201ENST00000384111 134 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RNU6-748P-201ENST00000384648 107 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AL033519.2-201ENST00000403958 392 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 SNORA3C-201ENST00000408792 125 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RPS26P42-201ENST00000413485 326 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA3O43365 HMGB1P37-201ENST00000439613 609 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AC010095.1-201ENST00000443543 144 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RN7SL585P-201ENST00000470538 280 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA3O43365 AIG1P1-201ENST00000503376 148 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA3O43365 SERF1AP1-201ENST00000514575 187 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 RNU6-567P-201ENST00000516746 107 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AC244505.7-201ENST00000599675 272 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 SNORD113-5-201ENST00000607261 78 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AC009093.8-201ENST00000641769 292 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 AC010680.1-201ENST00000590024 3590 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA3O43365 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA3O43365 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA3O43365 AC010889.1-201ENST00000566193 2666 ntBASIC3.11□□□□□ -1.91
HOXA3O43365 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.11□□□□□ -1.91
HOXA3O43365 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 RNA5SP119-201ENST00000362715 117 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU6-873P-201ENST00000363833 107 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU6-961P-201ENST00000363893 105 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 Y_RNA.286-201ENST00000364813 102 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 U1.1-201ENST00000384101 164 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU6-20P-201ENST00000384106 107 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU6-209P-201ENST00000384118 107 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AP000567.1-201ENST00000406413 156 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU4-30P-201ENST00000410245 143 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AC093578.1-201ENST00000415219 368 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AC138623.1-201ENST00000418060 216 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA3O43365 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA3O43365 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA3O43365 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA3O43365 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA3O43365 CEACAMP4-201ENST00000457676 421 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA3O43365 AC073901.1-201ENST00000462471 408 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU4-71P-201ENST00000516258 113 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AK6P2-201ENST00000549020 471 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA3O43365 MIR4423-201ENST00000580922 80 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RNU6-91P-201ENST00000607774 107 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AC019176.2-201ENST00000611579 315 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 AC006111.3-201ENST00000622137 383 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 SNORD98-201ENST00000636377 67 ntBASIC3.1□□□□□ -1.91
HOXA3O43365 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA3O43365 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
HOXA3O43365 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA3O43365 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA3O43365 AC008725.1-201ENST00000605123 2263 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA3O43365 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.09□□□□□ -1.91
HOXA3O43365 RNY1-201ENST00000364228 113 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 Y_RNA.269-201ENST00000364685 89 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 Y_RNA.333-201ENST00000365274 102 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HOXA3O43365 RNA5SP252-201ENST00000391131 119 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 CYCSP48-201ENST00000417124 323 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 AL035423.1-201ENST00000420331 213 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 AC112220.1-201ENST00000434628 355 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
HOXA3O43365 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA3O43365 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA3O43365 AL441985.1-201ENST00000457727 251 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 AC007215.1-201ENST00000464893 276 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 SNRPGP3-201ENST00000469405 227 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 GZMAP1-201ENST00000503054 631 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 SNORA40.9-201ENST00000515895 93 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 RNU5F-2P-201ENST00000516066 82 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 SNORA25.14-201ENST00000516481 132 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 RNU7-110P-201ENST00000516891 62 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 SCARNA14-201ENST00000516903 136 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 IGKV2-38-201ENST00000517443 247 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 AC022080.3-201ENST00000544433 482 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 AC130289.1-201ENST00000577321 73 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 MIR4643-201ENST00000577473 78 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA3O43365 RPS15AP11-201ENST00000594193 385 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms