Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL358453.1-201ENST00000422522 250 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AC243964.1-201ENST00000441814 261 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AL360221.1-201ENST00000445989 335 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN3O15551 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN3O15551 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN3O15551 AC010486.2-201ENST00000505572 483 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.84□□□□□ -2.11
CLDN3O15551 MTCO3P28-201ENST00000513351 515 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.84□□□□□ -2.11
CLDN3O15551 TRAV32-201ENST00000553993 340 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.84□□□□□ -2.11
CLDN3O15551 AC012414.6-201ENST00000568241 401 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AL034555.1-201ENST00000604816 211 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 AP000654.2-201ENST00000605633 586 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 uc_338.11-201ENST00000619132 160 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 U1.36-201ENST00000620684 176 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.84□□□□□ -2.11
CLDN3O15551 AC008993.2-201ENST00000631744 806 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 Y_RNA.99-201ENST00000363138 105 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 U3.4-201ENST00000363352 213 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 RNU4-91P-201ENST00000364778 135 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CLDN3O15551 RNU6-434P-201ENST00000384376 107 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 SNORD70.1-201ENST00000391007 85 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 RNU6-248P-201ENST00000410720 107 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 RNA5SP501-201ENST00000410990 112 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.83□□□□□ -2.12
CLDN3O15551 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CLDN3O15551 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.83□□□□□ -2.12
CLDN3O15551 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.83□□□□□ -2.12
CLDN3O15551 PRPS1P1-201ENST00000445305 876 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.83□□□□□ -2.12
CLDN3O15551 LRRC34P2-201ENST00000514850 553 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 MIR449C-201ENST00000516047 92 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 AC109479.2-201ENST00000517842 174 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.83□□□□□ -2.12
CLDN3O15551 AP002963.1-201ENST00000530590 184 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.83□□□□□ -2.12
CLDN3O15551 AC123912.5-201ENST00000605470 343 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CLDN3O15551 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CLDN3O15551 SNORD98-201ENST00000636377 67 ntBASIC1.83□□□□□ -2.12
CLDN3O15551 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.82□□□□□ -2.12
CLDN3O15551 RNU6-428P-201ENST00000362942 107 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 RNU6-181P-201ENST00000363225 107 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 SNORA12-201ENST00000391162 147 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 SNORD56-201ENST00000413522 71 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 PIGFP2-201ENST00000421400 651 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 UBE2V1P4-201ENST00000425374 344 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC244505.5-201ENST00000443639 207 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.82□□□□□ -2.12
CLDN3O15551 MTND1P27-201ENST00000451117 902 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN3O15551 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.82□□□□□ -2.12
CLDN3O15551 MTND3P7-201ENST00000474435 343 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC145146.1-201ENST00000496370 254 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN3O15551 RNU6-445P-201ENST00000516949 107 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AL356057.1-201ENST00000533798 831 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN3O15551 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN3O15551 AC091805.2-201ENST00000603848 235 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC018889.1-201ENST00000605372 397 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AL353997.5-201ENST00000618886 171 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC130454.1-201ENST00000622948 401 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 AC022418.1-201ENST00000624118 445 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLDN3O15551 AL390237.1-201ENST00000404226 1415 ntBASIC1.82□□□□□ -2.12
CLDN3O15551 RNU1-17P-201ENST00000363022 152 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 RNU6-23P-201ENST00000363283 107 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 RNU6-1285P-201ENST00000363480 105 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 RNU6-336P-201ENST00000364891 107 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 RNU6-692P-201ENST00000384496 107 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 AL357139.1-201ENST00000407792 426 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 RNU2-9P-201ENST00000410194 145 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.81□□□□□ -2.12
CLDN3O15551 AL031274.1-201ENST00000450334 232 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.81□□□□□ -2.12
CLDN3O15551 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.81□□□□□ -2.12
CLDN3O15551 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.81□□□□□ -2.12
CLDN3O15551 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.81□□□□□ -2.12
CLDN3O15551 AC145350.1-201ENST00000567426 208 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 MIR4713-201ENST00000582691 75 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 AC099842.1-201ENST00000619919 596 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.81□□□□□ -2.12
CLDN3O15551 AC009161.2-201ENST00000624626 138 ntBASIC1.81□□□□□ -2.12
CLDN3O15551 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.81□□□□□ -2.12
CLDN3O15551 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CLDN3O15551 AC245060.5-201ENST00000610778 3293 ntBASIC1.8□□□□□ -2.12
CLDN3O15551 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
CLDN3O15551 RNU4-15P-201ENST00000362613 141 ntBASIC1.8□□□□□ -2.12
CLDN3O15551 Y_RNA.480-201ENST00000384364 102 ntBASIC1.8□□□□□ -2.12
CLDN3O15551 RNU6-160P-201ENST00000384591 107 ntBASIC1.8□□□□□ -2.12
CLDN3O15551 AL033519.2-201ENST00000403958 392 ntBASIC1.8□□□□□ -2.12
CLDN3O15551 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.8□□□□□ -2.12
CLDN3O15551 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 335.4 ms