Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC008507.2-201ENST00000588402 1176 ntBASIC0.53□□□□□ -2.32
HMGB3O15347 AC022432.1-201ENST00000595739 310 ntBASIC0.53□□□□□ -2.32
HMGB3O15347 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.53□□□□□ -2.32
HMGB3O15347 AL354696.1-201ENST00000614652 497 ntBASIC0.53□□□□□ -2.32
HMGB3O15347 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.52□□□□□ -2.33
HMGB3O15347 RNU6-142P-201ENST00000384019 107 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 SNORD12-201ENST00000391002 90 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 RNU4-22P-201ENST00000411058 166 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 COX6CP10-201ENST00000416832 224 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 RAB28P5-201ENST00000427490 651 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 USP9YP14-201ENST00000430663 563 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 RPL23AP30-201ENST00000432419 501 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 RPS25P9-201ENST00000435591 252 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 MTCYBP39-201ENST00000437562 491 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 AC002429.1-201ENST00000437672 148 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.52□□□□□ -2.33
HMGB3O15347 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.52□□□□□ -2.33
HMGB3O15347 AC104806.1-201ENST00000508720 308 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 MTND3P5-201ENST00000512798 333 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 RN7SKP265-201ENST00000516448 223 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
HMGB3O15347 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.52□□□□□ -2.33
HMGB3O15347 MIR548AC-201ENST00000585049 88 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC0.52□□□□□ -2.33
HMGB3O15347 AC131235.4-201ENST00000609288 620 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 uc_338.17-201ENST00000619633 179 ntBASIC0.52□□□□□ -2.33
HMGB3O15347 MIR378A-201ENST00000362177 66 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 RNU6-1123P-201ENST00000362347 106 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 RNU4-79P-201ENST00000362764 141 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 RNA5SP259-201ENST00000365541 109 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 MIR544A-201ENST00000384855 91 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
HMGB3O15347 AL591043.1-201ENST00000432461 424 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC0.51□□□□□ -2.33
HMGB3O15347 RPL39P38-201ENST00000467018 153 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 AC109445.1-201ENST00000512356 383 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGB3O15347 AC090142.3-201ENST00000519012 385 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGB3O15347 AP003484.1-201ENST00000530974 250 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGB3O15347 MIR4709-201ENST00000577272 72 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 MIR3945-201ENST00000581853 98 ntBASIC0.51□□□□□ -2.33
HMGB3O15347 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.51□□□□□ -2.33
HMGB3O15347 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
HMGB3O15347 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.51□□□□□ -2.33
HMGB3O15347 RNU6-78P-201ENST00000362897 107 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 SNORA4.2-201ENST00000365313 147 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 MIR200A-201ENST00000384875 90 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 MTCYBP2-201ENST00000407745 171 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.5□□□□□ -2.33
HMGB3O15347 AC063976.4-201ENST00000421971 163 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC016925.1-201ENST00000458303 298 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 TOMM22P6-201ENST00000465035 409 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
HMGB3O15347 SNORA31.4-201ENST00000516049 129 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.5□□□□□ -2.33
HMGB3O15347 DEFB108E-201ENST00000524692 240 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AP003049.1-201ENST00000529418 457 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGB3O15347 AC009712.1-201ENST00000564938 316 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 MIR544B-201ENST00000582372 78 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC105148.1-201ENST00000604961 409 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC144521.1-201ENST00000607148 956 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC104073.3-201ENST00000610942 955 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AL359547.2-201ENST00000615810 418 ntBASIC0.5□□□□□ -2.33
HMGB3O15347 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.5□□□□□ -2.33
HMGB3O15347 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
HMGB3O15347 Y_RNA.124-201ENST00000363339 93 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 SNORD31B-201ENST00000364977 69 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 RNU6-910P-201ENST00000390844 107 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 RNU6-733P-201ENST00000410759 104 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 RNU6-1054P-201ENST00000411293 104 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 AL031779.1-201ENST00000415663 330 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGB3O15347 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGB3O15347 AC010531.2-201ENST00000465012 153 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 RAP1BP2-201ENST00000478270 544 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.49□□□□□ -2.33
HMGB3O15347 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.49□□□□□ -2.33
HMGB3O15347 AC108078.2-201ENST00000510750 236 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGB3O15347 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.49□□□□□ -2.33
HMGB3O15347 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC0.49□□□□□ -2.33
HMGB3O15347 AL121579.1-201ENST00000555129 305 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 MIR3136-201ENST00000583498 78 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 RNU6-88P-201ENST00000606801 100 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 AC026585.1-201ENST00000619582 524 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 MIR6835-201ENST00000621552 64 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGB3O15347 AC103706.2-201ENST00000638080 240 ntBASIC0.49□□□□□ -2.33
HMGB3O15347 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
HMGB3O15347 RNA5SP361-201ENST00000362686 118 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 Y_RNA.140-201ENST00000363474 103 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
HMGB3O15347 RNU6-1179P-201ENST00000384667 107 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 MIR578-201ENST00000384828 96 ntBASIC0.48□□□□□ -2.33
HMGB3O15347 MIR605-201ENST00000385078 83 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms