Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 AC244015.1-201ENST00000622301 99 ntBASIC0.07□□□□□ -2.4
TRAV1-2A0A0B4J238 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
TRAV1-2A0A0B4J238 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU1-96P-201ENST00000364163 162 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-707P-201ENST00000364647 95 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR216A-201ENST00000385063 110 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD65.1-201ENST00000390889 71 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORA12.2-201ENST00000391040 156 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-817P-201ENST00000391083 104 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL079342.2-201ENST00000403367 482 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU4-27P-201ENST00000410889 139 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL606662.1-201ENST00000445763 553 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL353718.1-201ENST00000451028 517 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AC105313.1-201ENST00000509121 353 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR5695-201ENST00000579717 85 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR4769-201ENST00000584126 77 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL031281.1-201ENST00000604049 488 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AC007363.1-201ENST00000604736 620 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AC100814.1-201ENST00000606963 623 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL355816.2-201ENST00000610049 647 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AP000676.3-201ENST00000623299 569 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL512643.1-201ENST00000635735 524 ntBASIC0.06□□□□□ -2.4
TRAV1-2A0A0B4J238 AL159152.1-201ENST00000635019 2587 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 CDR1-202ENST00000625883 1485 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC245060.5-201ENST00000610778 3293 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD3E-201ENST00000362899 217 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORA75B-201ENST00000384053 137 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-45P-201ENST00000384471 107 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD116-20-201ENST00000384529 92 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-950P-201ENST00000384651 107 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 BTF3L4P1-201ENST00000413813 468 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL365338.1-201ENST00000422282 858 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL590556.1-201ENST00000423231 483 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 FABP5P4-201ENST00000437203 171 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RPS20P10-201ENST00000451209 253 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL162395.1-201ENST00000457882 422 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU7-21P-201ENST00000459430 62 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC022493.2-201ENST00000506122 481 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-1315P-201ENST00000517187 99 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 SLC2A13P1-201ENST00000531560 322 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC122134.1-202ENST00000569111 1201 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR4789-201ENST00000577469 82 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR1273C-201ENST00000578669 77 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC060771.1-201ENST00000582031 164 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 HMGN1P30-201ENST00000589286 268 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL078603.1-201ENST00000603824 313 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL513534.2-201ENST00000603836 250 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 RAC1P9-201ENST00000604990 392 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 AL359740.1-201ENST00000624340 592 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD3E-202ENST00000627253 216 ntBASIC0.05□□□□□ -2.4
TRAV1-2A0A0B4J238 MTND5P16-201ENST00000460269 1703 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL079343.1-201ENST00000572358 1771 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-349P-201ENST00000362402 107 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-1284P-201ENST00000363701 100 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-534P-201ENST00000364877 106 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-1327P-201ENST00000365302 105 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-72P-201ENST00000384285 79 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR19A-201ENST00000384878 82 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORA12-201ENST00000391162 147 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD99-201ENST00000408612 74 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 MTCO3P41-201ENST00000414801 328 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RPL22P18-201ENST00000417197 377 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 DPRXP1-201ENST00000426312 460 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 MTND4P25-201ENST00000441039 533 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RPEP5-201ENST00000441137 268 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AC104563.1-201ENST00000476147 376 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AC092991.1-201ENST00000477176 376 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU6-64P-201ENST00000517119 105 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL132657.2-201ENST00000564417 358 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL136363.2-201ENST00000604173 851 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AC018889.1-201ENST00000605372 397 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL360219.1-201ENST00000610230 366 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 MIR6504-201ENST00000613520 61 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 AL359757.2-201ENST00000624309 274 ntBASIC0.04□□□□□ -2.4
TRAV1-2A0A0B4J238 RNU4-15P-201ENST00000362613 141 ntBASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 SNORD89-201ENST00000390981 114 ntBASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 RNA5SP193-201ENST00000410353 107 ntBASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.03□□□□□ -2.4
TRAV1-2A0A0B4J238 DAP3P1-201ENST00000441522 278 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms