Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.675-201ENST00000516389 149 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC021231.3-201ENST00000558497 370 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC090616.3-201ENST00000582184 217 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC009229.3-201ENST00000608056 282 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 AC093010.3-201ENST00000570269 15214 ntBASIC4.32□□□□□ -1.72
CCDC9Q9Y3X0 KPNA2P1-201ENST00000458289 1591 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.2-201ENST00000362330 96 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 RNU4-73P-201ENST00000363164 141 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-968P-201ENST00000384076 107 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 CBX3P9-201ENST00000402326 552 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 RNA5SP508-201ENST00000411327 119 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 CKS1BP2-201ENST00000497342 240 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 YWHAEP4-201ENST00000505390 198 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 RNU5F-2P-201ENST00000516066 82 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 SNORA31.26-201ENST00000517250 137 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 AC016256.1-201ENST00000547971 354 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 MIR5690-201ENST00000583739 73 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 AC011494.1-201ENST00000596454 237 ntBASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC9Q9Y3X0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.473-201ENST00000384333 102 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.638-201ENST00000459374 113 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AC090525.1-201ENST00000479116 478 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.670-201ENST00000516255 105 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 FRG2DP-202ENST00000566967 323 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AC093249.1-201ENST00000567049 203 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AP000654.2-201ENST00000605633 586 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 AC104985.2-201ENST00000620598 500 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 MTND5P9-201ENST00000503854 1755 ntBASIC4.3□□□□□ -1.72
CCDC9Q9Y3X0 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-694P-201ENST00000364071 147 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 SNORA54-201ENST00000384281 123 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-220P-201ENST00000390919 107 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 SNORA75.4-201ENST00000391278 119 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AL590556.1-201ENST00000423231 483 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AL121890.1-201ENST00000435457 205 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC092185.1-201ENST00000491371 97 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 HMGB1P35-201ENST00000503360 598 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-307P-201ENST00000516743 106 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-567P-201ENST00000516746 107 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 RN7SKP40-201ENST00000517211 242 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 NDUFB9P3-201ENST00000521269 501 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 MIR4319-201ENST00000577285 85 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 ELOCP29-201ENST00000588193 334 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC060766.3-201ENST00000591442 263 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AL117336.2-201ENST00000602435 335 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AL034555.1-201ENST00000604816 211 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC090517.3-201ENST00000625170 141 ntBASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC9Q9Y3X0 AC233981.2-201ENST00000611524 1614 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 Y_RNA.259-201ENST00000364619 101 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 RNU6-174P-201ENST00000410406 106 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AL139281.1-201ENST00000422120 335 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 FO393415.2-201ENST00000480085 343 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 RNA5SP367-201ENST00000516557 118 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AC026333.2-201ENST00000542164 106 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AL353621.2-201ENST00000605340 133 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 HMGB1P24-202ENST00000615653 685 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AL449363.1-201ENST00000617815 186 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 MIR5739-201ENST00000619803 80 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 SNORA43.4-201ENST00000629559 138 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 AL669831.3-213ENST00000636676 183 ntBASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC9Q9Y3X0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.28□□□□□ -1.73
CCDC9Q9Y3X0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 Y_RNA.67-201ENST00000362870 100 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-1286P-201ENST00000383871 107 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-842P-201ENST00000384269 107 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms