Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AL391261.3-201ENST00000557194 520 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AL357075.2-201ENST00000614906 189 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 MIR6075-201ENST00000620782 95 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 AC009093.8-201ENST00000641769 292 ntBASIC4.67□□□□□ -1.66
CHMP3Q9Y3E7 BX322639.1-202ENST00000423987 2213 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AC118273.1-201ENST00000525324 3006 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 MIR410-201ENST00000362222 80 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.82-201ENST00000363000 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.92-201ENST00000363043 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.235-201ENST00000364412 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RNA5SP51-201ENST00000364750 119 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.306-201ENST00000365015 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.312-201ENST00000365089 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.322-201ENST00000365151 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RNY1P5-201ENST00000383890 115 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 MIR449B-201ENST00000384995 97 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-1197P-201ENST00000391183 107 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-1245P-201ENST00000411130 106 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RPL19P1-201ENST00000411635 428 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 MTATP6P7-201ENST00000453315 681 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.650-201ENST00000459002 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.777-201ENST00000516982 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 RNU6-58P-201ENST00000517143 103 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AC090877.1-201ENST00000561418 344 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.771-201ENST00000598668 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AC008739.3-201ENST00000603262 127 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AC024581.2-201ENST00000619986 252 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Y_RNA.789-201ENST00000622480 102 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 U6.106-201ENST00000636360 105 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CHMP3Q9Y3E7 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 UBE2WP1-201ENST00000362030 340 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-704P-201ENST00000364162 103 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 Y_RNA.308-201ENST00000365043 101 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 RNU1-100P-201ENST00000365255 165 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-217P-201ENST00000384164 104 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-1145P-201ENST00000384246 107 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-159P-201ENST00000391080 106 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 MTHFD2P2-201ENST00000407725 247 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AC093578.1-201ENST00000415219 368 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 HMGN2P31-201ENST00000432430 273 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 SETP5-201ENST00000437270 562 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AC007969.2-201ENST00000441891 191 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AC006026.2-201ENST00000457376 180 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 snoU13.6-201ENST00000458785 104 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 SNORA40.9-201ENST00000515895 93 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 MRPS18CP4-201ENST00000535821 231 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AC008011.1-201ENST00000545989 227 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 MIR3144-201ENST00000579460 79 ntBASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
CHMP3Q9Y3E7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 Y_RNA.240-201ENST00000364469 95 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 Y_RNA.398-201ENST00000383952 99 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RNU1-73P-201ENST00000383971 164 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 MIR544A-201ENST00000384855 91 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 MIR613-201ENST00000385248 95 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RPS29P4-201ENST00000414733 161 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AC138623.1-201ENST00000418060 216 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RPL21P66-201ENST00000426566 466 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AL356535.1-201ENST00000440335 398 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AP001324.2-201ENST00000461163 319 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RN7SKP18-201ENST00000516005 275 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-1219P-201ENST00000516143 112 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 RNU6-966P-201ENST00000516479 104 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 SNORA27.4-201ENST00000516650 95 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 IGKV2D-19-201ENST00000523346 262 ntBASIC4.64□□□□□ -1.67
CHMP3Q9Y3E7 AC055872.1-201ENST00000570978 278 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms