Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 CST9LP2-201ENST00000437612 320 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 SNORA64.4-201ENST00000516632 81 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 CYCSP39-201ENST00000565821 309 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 MIR4782-201ENST00000577987 79 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 VN1R107P-201ENST00000601784 209 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 HSPE1P7-201ENST00000604681 321 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 MIR3976-201ENST00000606807 139 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 AC005014.2-201ENST00000607795 599 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 7SK.10-201ENST00000621414 298 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 MAPK10-266ENST00000641066 6555 ntBASIC3.24□□□□□ -1.89
DKK3Q9UBP4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
DKK3Q9UBP4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 SNORD56.5-201ENST00000364281 72 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL138885.1-201ENST00000405921 675 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL139281.1-201ENST00000422120 335 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 MTCYBP10-201ENST00000424905 650 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC092573.2-201ENST00000434546 243 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 HIGD1AP2-201ENST00000446367 280 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 RNU6-377P-201ENST00000515965 102 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 RNU4-77P-201ENST00000516692 156 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 RNU6-1183P-201ENST00000517054 60 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.721-201ENST00000517207 102 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AP005902.1-201ENST00000521358 186 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 CBX3P8-201ENST00000532412 525 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AP000867.2-201ENST00000532468 320 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 MIR5696-201ENST00000578474 85 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 MIR3671-201ENST00000580455 88 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC104695.3-201ENST00000604052 296 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL132822.1-201ENST00000617063 513 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AC073476.4-201ENST00000628409 72 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 AL606534.2-204ENST00000635008 178 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 U6.99-201ENST00000637524 83 ntBASIC3.23□□□□□ -1.89
DKK3Q9UBP4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.39-201ENST00000362620 98 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RNY1P16-201ENST00000363063 111 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RNU5E-7P-201ENST00000365290 117 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.455-201ENST00000384230 98 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 SNORA7.4-201ENST00000384249 137 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.645-201ENST00000391229 102 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 MIR888-201ENST00000401186 77 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 U3.37-201ENST00000408528 213 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RPL26P27-201ENST00000414397 437 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 MRPS18CP6-201ENST00000423587 223 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 IPO7P1-201ENST00000442031 636 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RN7SL863P-201ENST00000462370 296 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RN7SL499P-201ENST00000481141 276 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 MTCO2P24-201ENST00000515611 426 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 Y_RNA.687-201ENST00000516558 91 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AC103996.1-201ENST00000555468 102 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 HMGB1P14-201ENST00000557424 591 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 LINC00933-203ENST00000559812 219 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AMZ2P1-203ENST00000565833 850 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AL451007.1-201ENST00000595491 289 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 RPL23AP88-201ENST00000605759 454 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AL162274.2-201ENST00000614406 332 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AC002064.3-201ENST00000623448 346 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 AC018692.3-201ENST00000623929 123 ntBASIC3.22□□□□□ -1.89
DKK3Q9UBP4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DKK3Q9UBP4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
DKK3Q9UBP4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 Z98749.2-208ENST00000381646 500 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 RNU1-73P-201ENST00000383971 164 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 RNU6-196P-201ENST00000384315 107 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 Y_RNA.527-201ENST00000384573 102 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 MIR518D-201ENST00000385014 87 ntBASIC3.21□□□□□ -1.9
DKK3Q9UBP4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
DKK3Q9UBP4 FO393413.1-201ENST00000402892 195 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms