Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.35□□□□□ -1.87
NUP88Q99567 BMS1P22-201ENST00000414726 313 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AC007969.2-201ENST00000441891 191 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 FTH1P25-201ENST00000447665 469 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NUP88Q99567 Y_RNA.653-201ENST00000459091 95 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RPL7P42-201ENST00000481005 679 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AP001025.1-201ENST00000486139 332 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RN7SL633P-201ENST00000488974 297 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RPL22P13-201ENST00000493291 347 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SEM1P1-201ENST00000506694 209 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.35□□□□□ -1.87
NUP88Q99567 AC026782.1-201ENST00000512952 449 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.35□□□□□ -1.87
NUP88Q99567 APOOP3-201ENST00000536787 586 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.35□□□□□ -1.87
NUP88Q99567 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.35□□□□□ -1.87
NUP88Q99567 CPDP1-201ENST00000579660 283 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RPL23AP78-201ENST00000599928 470 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 RNU6-91P-201ENST00000607774 107 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AC133104.2-201ENST00000615272 193 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 AC007792.1-201ENST00000623023 402 ntBASIC3.35□□□□□ -1.87
NUP88Q99567 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NUP88Q99567 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.35□□□□□ -1.87
NUP88Q99567 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NUP88Q99567 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
NUP88Q99567 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.34□□□□□ -1.87
NUP88Q99567 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
NUP88Q99567 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.34□□□□□ -1.87
NUP88Q99567 Y_RNA.509-201ENST00000384506 99 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AP000275.1-201ENST00000411943 390 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.34□□□□□ -1.87
NUP88Q99567 AP004217.1-201ENST00000480579 346 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AC006483.1-201ENST00000487308 313 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 SNORA31.6-201ENST00000516241 130 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 Y_RNA.670-201ENST00000516255 105 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AC007375.1-201ENST00000554513 578 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.34□□□□□ -1.87
NUP88Q99567 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.34□□□□□ -1.87
NUP88Q99567 ELOCP29-201ENST00000588193 334 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 RPL12P50-201ENST00000603116 116 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AC090574.1-201ENST00000623186 233 ntBASIC3.34□□□□□ -1.87
NUP88Q99567 AL035425.3-201ENST00000564206 4996 ntBASIC3.34□□□□□ -1.88
NUP88Q99567 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
NUP88Q99567 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.34□□□□□ -1.88
NUP88Q99567 AL359854.1-201ENST00000614203 1594 ntBASIC3.34□□□□□ -1.88
NUP88Q99567 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
NUP88Q99567 MTND5P30-201ENST00000452896 1731 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.33□□□□□ -1.88
NUP88Q99567 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.33□□□□□ -1.88
NUP88Q99567 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.33□□□□□ -1.88
NUP88Q99567 Y_RNA.11-201ENST00000362375 109 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 RNU6-622P-201ENST00000384272 103 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 RNY4P36-201ENST00000391116 96 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 ATG3P1-201ENST00000419507 911 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 AC087499.2-201ENST00000432861 149 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 SNORD5.1-201ENST00000458800 75 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 SNORD19B-201ENST00000459623 84 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.33□□□□□ -1.88
NUP88Q99567 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.33□□□□□ -1.88
NUP88Q99567 CKS1BP7-201ENST00000522230 235 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 MTCO3P13-201ENST00000577757 781 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 AC011494.1-201ENST00000596454 237 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 AP000654.2-201ENST00000605633 586 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 MIR7515-201ENST00000637837 67 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.33□□□□□ -1.88
NUP88Q99567 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.33□□□□□ -1.88
NUP88Q99567 AC002543.1-201ENST00000299783 1954 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AL109809.4-201ENST00000603520 2185 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.32□□□□□ -1.88
NUP88Q99567 RNU6-1188P-201ENST00000363795 107 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 U8.8-201ENST00000365399 135 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 RNU6-851P-201ENST00000384565 107 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 Y_RNA.535-201ENST00000384612 99 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 RNU6-1222P-201ENST00000384615 107 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AL139281.1-201ENST00000422120 335 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.32□□□□□ -1.88
NUP88Q99567 FO393415.2-201ENST00000480085 343 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.32□□□□□ -1.88
NUP88Q99567 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.32□□□□□ -1.88
NUP88Q99567 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.32□□□□□ -1.88
NUP88Q99567 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.32□□□□□ -1.88
NUP88Q99567 HPRT1P3-201ENST00000539521 576 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 HSPE1P4-201ENST00000550617 308 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.32□□□□□ -1.88
NUP88Q99567 AC078795.3-201ENST00000602913 472 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AC073410.2-201ENST00000603240 332 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AL627309.6-201ENST00000606857 840 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.32□□□□□ -1.88
NUP88Q99567 AC096644.4-201ENST00000563417 2912 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NUP88Q99567 AC009487.2-201ENST00000420969 6821 ntBASIC3.32□□□□□ -1.88
NUP88Q99567 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
NUP88Q99567 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
NUP88Q99567 Y_RNA.431-201ENST00000384086 102 ntBASIC3.31□□□□□ -1.88
NUP88Q99567 Y_RNA.460-201ENST00000384255 102 ntBASIC3.31□□□□□ -1.88
NUP88Q99567 RNU6-43P-201ENST00000384302 107 ntBASIC3.31□□□□□ -1.88
NUP88Q99567 Y_RNA.504-201ENST00000384481 104 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms